CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.707e-56 Identity = 116/169 (68.64%), Postives = 135/169 (79.88%), Query Frame = 1 Query: 28 AGASSVWML-NQSSFLGSCQQLSSVSKLVXXXXXXXXXXXLFIVEASTRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +G SV ++ N+S+FLG+ Q +V + +VEA T+ T EDR ARHSRI+KK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPIS+E DY+SGPTIEV+KKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AARE+GLQ Sbjct: 5 SGCGSVSLITNRSAFLGNGLQHRAV--FLKPWSSSSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQ 169
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 8.787e-45 Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 1 Query: 151 IVEASTRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 +V A + T + DR ARH R++KK+ GT ERPRL VFRSNKHLY QVIDDTK TL SASTM K +S +L+YS+GPT+EV++K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE GL Sbjct: 43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGL 168
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35 Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 + +K+E R RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+ Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35 Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 + +K+E R RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+ Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35 Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 + +K+E R RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+ Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34 Identity = 73/113 (64.60%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE +KKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+ Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 6.978e-34 Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 + ++ E R RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + IE +K+VG +I K +EKGI KV FDRGGY YHGR++ALAD ARE GL+ Sbjct: 3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.555e-33 Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH+R++KKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E D S IE +KKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+ Sbjct: 11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.030e-33 Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE +KKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+ Sbjct: 11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP7 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33 Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 RT+ E RHSRI++K++GTP RPRL VFRSN H+Y QVIDD HTL +AST+ K + E +SSG T E S+ VG+++A+ L KGI KV FDRGG YHGRI+ALA AARE GL Sbjct: 3 RTRTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE--FSSGATCEASEAVGKLVAQRALAKGIEKVVFDRGGNLYHGRIRALAQAAREAGL 118 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |