CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_FERNB (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31 Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 181 KREDRT----ARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 KREDR RH R++KKI GTPERPRL VFRS KH+Y Q+IDDTK TL +AST++K + ++L + I +K+VG++IA+ L KGI +V FDRGG+ YHGR++ALADAARE GL+ Sbjct: 3 KREDRRQLRLVRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTW--NITAAKEVGKLIAERALAKGIKEVVFDRGGFKYHGRVKALADAAREAGLK 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31 Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +K R RH+R++ K+ GTPERPRL VFRSNKH+Y QVIDD TL SAST+ K + E +G + KVGE++AK EKGIT V FDRGGY YHGR++ALADAARE GL+ Sbjct: 6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 5.529e-31 Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ + GT ++PRL V+RSNKH+Y Q+IDDTK TL AST K +E +G +E+S KVGE IAK +KGIT++ FDRGGY YHGR++ALADAARE GLQ Sbjct: 7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAKKAADKGITEIVFDRGGYLYHGRVKALADAARENGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 7.221e-31 Identity = 65/118 (55.08%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T++E RH RI++K+ GTP+ PRL VFRSN H+Y Q+IDD HTLA+AST++ + + L SSG T E S VG+++A+ + KGI +V FDRGG YHGR++ALADAARE GLQ Sbjct: 4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAERGMAKGIEQVVFDRGGNLYHGRVKALADAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31 Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH R++ K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + + P IE ++ VG+++ + L KGIT+V FDRGGY YHGR++ALAD AR GLQ Sbjct: 12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGERALAKGITRVVFDRGGYKYHGRVKALADGARAAGLQ 123
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAS1 (50S ribosomal protein L18 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplR PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.232e-30 Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ K+ GT E+PRL ++RSNKH+Y QVIDD TLA AST +K +++E SG +E+S KVGE +AK EKG+ + FDRGGY YHGR++ALADAARE GL+ Sbjct: 7 KNKVRLKRHARVRNKLAGTAEKPRLNIYRSNKHIYAQVIDDVSGKTLAQASTQEKDLANE----SGSKVELSAKVGETVAKRASEKGVKTIVFDRGGYLYHGRVKALADAARENGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.232e-30 Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+RE + RH R++ K+ G+PERPRL VFRSN+H+Y QVIDD++ T+ +AST++ + L +SG + S +VG++IA LEKGITKV FDRGG YHGR++ALADAARE GL Sbjct: 4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIAVRSLEKGITKVVFDRGGNLYHGRVKALADAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.609e-30 Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K +R RH R+++KI GT +RPRLCVFRS ++Y Q+IDDTK TL +AS+++ + ++++ E +KKVGE++AK +EKGIT+V FDRGGY YHGRIQ LA+ ARE GL+ Sbjct: 7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAKKAVEKGITEVVFDRGGYLYHGRIQELAEGAREAGLK 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.609e-30 Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 RT RE R RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT HTL +AST++K +S P + +++ VG++IA+ L+ GITKV FDRGGY YHGR++ALA+AARE GL Sbjct: 4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_TRIEI (50S ribosomal protein L18 OS=Trichodesmium erythraeum (strain IMS101) GN=rplR PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30 Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+++ RH R++KK+ GT ERPRL VFRSN H+Y QVIDDTK HTL +AST++ + + SG + S ++G++IA+ LEKGI KV FDRGG YHGR++ALA+AARE GL Sbjct: 4 TRKDSIIKRHRRVRKKVFGTSERPRLSVFRSNMHIYAQVIDDTKQHTLVAASTLEAEVKSTI--KSGANCDASIQIGKLIAQRSLEKGIEKVVFDRGGNLYHGRVKALAEAAREAGL 118 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |