CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_FERNB (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  181 KREDRT----ARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            KREDR      RH R++KKI GTPERPRL VFRS KH+Y Q+IDDTK  TL +AST++K + ++L  +    I  +K+VG++IA+  L KGI +V FDRGG+ YHGR++ALADAARE GL+
Sbjct:    3 KREDRRQLRLVRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTW--NITAAKEVGKLIAERALAKGIKEVVFDRGGFKYHGRVKALADAAREAGLK 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +K   R  RH+R++ K+ GTPERPRL VFRSNKH+Y QVIDD    TL SAST+ K  + E    +G     + KVGE++AK   EKGIT V FDRGGY YHGR++ALADAARE GL+
Sbjct:    6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE----NGSDTAAAAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STACT (50S ribosomal protein L18 OS=Staphylococcus carnosus (strain TM300) GN=rplR PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.529e-31
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++  + GT ++PRL V+RSNKH+Y Q+IDDTK  TL  AST  K   +E    +G  +E+S KVGE IAK   +KGIT++ FDRGGY YHGR++ALADAARE GLQ
Sbjct:    7 KNKVRLKRHARVRSNLSGTAQKPRLNVYRSNKHIYAQIIDDTKGVTLVQASTQDKDFENE----TGSKVELSSKVGEAIAKKAADKGITEIVFDRGGYLYHGRVKALADAARENGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.221e-31
Identity = 65/118 (55.08%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            T++E    RH RI++K+ GTP+ PRL VFRSN H+Y Q+IDD   HTLA+AST++  + + L  SSG T E S  VG+++A+  + KGI +V FDRGG  YHGR++ALADAARE GLQ
Sbjct:    4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAERGMAKGIEQVVFDRGGNLYHGRVKALADAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THERP (50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH R++ K+ GTPERPRL VFRSNKH+Y Q+IDDT+ HTL +AST++K + +       P IE ++ VG+++ +  L KGIT+V FDRGGY YHGR++ALAD AR  GLQ
Sbjct:   12 RKRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFP-DPHPKIEEARIVGQVVGERALAKGITRVVFDRGGYKYHGRVKALADGARAAGLQ 123          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAS1 (50S ribosomal protein L18 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.232e-30
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ K+ GT E+PRL ++RSNKH+Y QVIDD    TLA AST +K +++E    SG  +E+S KVGE +AK   EKG+  + FDRGGY YHGR++ALADAARE GL+
Sbjct:    7 KNKVRLKRHARVRNKLAGTAEKPRLNIYRSNKHIYAQVIDDVSGKTLAQASTQEKDLANE----SGSKVELSAKVGETVAKRASEKGVKTIVFDRGGYLYHGRVKALADAARENGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_NOSP7 (50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.232e-30
Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+RE +  RH R++ K+ G+PERPRL VFRSN+H+Y QVIDD++  T+ +AST++  +   L  +SG   + S +VG++IA   LEKGITKV FDRGG  YHGR++ALADAARE GL
Sbjct:    4 TRRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSSL--ASGANRDASVQVGKLIAVRSLEKGITKVVFDRGGNLYHGRVKALADAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOD6 (50S ribosomal protein L18 OS=Clostridium difficile (strain 630) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.609e-30
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K  +R  RH R+++KI GT +RPRLCVFRS  ++Y Q+IDDTK  TL +AS+++  +   ++++     E +KKVGE++AK  +EKGIT+V FDRGGY YHGRIQ LA+ ARE GL+
Sbjct:    7 KNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQIIDDTKRVTLVAASSLEAEVKSAVNHTGNK--EAAKKVGELVAKKAVEKGITEVVFDRGGYLYHGRIQELAEGAREAGLK 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLAD (50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplR PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.609e-30
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK---VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            RT RE R  RH+RI+K++ GTPERPRL VFRS+ H+Y QVIDDT  HTL +AST++K       +S  P +  +++   VG++IA+  L+ GITKV FDRGGY YHGR++ALA+AARE GL
Sbjct:    4 RTPRELRLRRHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEK------GWSGSPELTKTQEAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_TRIEI (50S ribosomal protein L18 OS=Trichodesmium erythraeum (strain IMS101) GN=rplR PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+++    RH R++KK+ GT ERPRL VFRSN H+Y QVIDDTK HTL +AST++  +   +   SG   + S ++G++IA+  LEKGI KV FDRGG  YHGR++ALA+AARE GL
Sbjct:    4 TRKDSIIKRHRRVRKKVFGTSERPRLSVFRSNMHIYAQVIDDTKQHTLVAASTLEAEVKSTI--KSGANCDASIQIGKLIAQRSLEKGIEKVVFDRGGNLYHGRVKALAEAAREAGL 118          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_FERNB4.234e-3157.0250S ribosomal protein L18 OS=Fervidobacterium nodo... [more]
RL18_BACLD4.234e-3157.6350S ribosomal protein L18 OS=Bacillus licheniformi... [more]
RL18_STACT5.529e-3155.5650S ribosomal protein L18 OS=Staphylococcus carnos... [more]
RL18_CYAA57.221e-3155.0850S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_THERP9.432e-3155.7550S ribosomal protein L18 OS=Thermomicrobium roseu... [more]
RL18_STAS11.232e-3054.7050S ribosomal protein L18 OS=Staphylococcus saprop... [more]
RL18_NOSP71.232e-3055.5650S ribosomal protein L18 OS=Nostoc punctiforme (s... [more]
RL18_CLOD61.609e-3052.9950S ribosomal protein L18 OS=Clostridium difficile... [more]
RL18_CHLAD1.609e-3056.2050S ribosomal protein L18 OS=Chloroflexus aggregan... [more]
RL18_TRIEI2.101e-3054.7050S ribosomal protein L18 OS=Trichodesmium erythra... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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