CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CHLP8 (50S ribosomal protein L18 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 52/117 (44.44%), Postives = 69/117 (58.97%), Query Frame = 1 Query: 190 DRTARHSRIKKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 D+ AR +IK + + G RPRLCV+RS +Y Q+IDD TL + STM K + G E S VG+ +A+ + +GI+ V FDR G+ YHGRI+ALAD ARE GL Sbjct: 5 DKAARRQKIKARSRATVHGNATRPRLCVYRSLSQIYAQLIDDESGKTLMAVSTMSKDNAG----LQGSKSERSAAVGKQLAEKAIAQGISNVVFDRNGFRYHGRIKALADGAREAGL 117
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BARBK (50S ribosomal protein L18 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 202 RHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 R R++++I RPRL V+RSN+++Y Q+IDD + TLASA T+++ + L SG + + VG++IA+ + GI +V FDRG Y YHGR++ALA+AARE GL Sbjct: 11 RAKRVRRQIKAAANGRPRLSVYRSNQNIYAQIIDDVRGCTLASACTLEEGMKKSL--RSGSDKKAAFAVGKLIAERAKKSGINEVVFDRGAYVYHGRVKALAEAAREGGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AZOPC (50S ribosomal protein L18 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplR PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 211 RIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKK-----VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 RI+K I GT ERPRL VFRSN+ +Y Q+IDD+ +TL AS++ G T +VSKK G ++A+ E GI V FDR GY YHGR++ LADAARE GL+ Sbjct: 14 RIRKYIFGTAERPRLTVFRSNRQIYSQLIDDSTGNTLVVASSL------------GITEKVSKKKIAYRTGVLVAQKAKEVGIRSVVFDRNGYLYHGRVKELADAAREEGLK 113
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ ++ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLK 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_VIBHB (50S ribosomal protein L18 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R ++KI RL V R+ +H+Y QVI +A+AST++K I +++ Y+ ++ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALA++ARE GL+ Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGN--VDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLK 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB9 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS195) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB8 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS185) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ R R +R +KKI RL V R+ +H+Y QVI+ + LA+AST++K + + L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+ Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVLAAASTVEKAVKELL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLK 115
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_METSB (50S ribosomal protein L18 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplR PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 K DR R +R+++ + +PRL VFRS+K +Y Q+IDD TLA+AS+++K + L +G +E ++ +G++IA+ G+T V FDRG Y YHGR++ALA+ ARE GL Sbjct: 6 KATDR--RRARVRRTLRARAYGKPRLSVFRSSKQIYCQIIDDEAGLTLAAASSLEKSARESL--KTGADVEAARAIGKLIAERATAAGVTDVVFDRGSYLYHGRVKALAEGAREGGL 118 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |