CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACIBL (50S ribosomal protein L18 OS=Acidobacteria bacterium (strain Ellin345) GN=rplR PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29 Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 205 HSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 HSRI+KK++GTPERPRL V+RS HLYVQVIDD+K TL +A+T++ + E +G + +K++G+ IA+ +KGI KV FDRGGY YHGRI+ALADAARE GL+ Sbjct: 15 HSRIRKKMEGTPERPRLNVYRSTNHLYVQVIDDSKGATLVAANTLEFGEAKEGKRPTGGNLSAAKQLGKAIAERAKQKGINKVVFDRGGYLYHGRIKALADAAREGGLE 123
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+P + E R RH R++KK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGL 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+P + E R RH R++KK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL AST+ + + G + +K VGE+IAK LEKGI V FDRGGY YHG ++ LADAAR+ GL Sbjct: 3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGL 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++++ RH R+++ + GT +RPRL VFRSN H+Y QVIDD TL SAST+ K + L ++G T + S VGE++AK L KGI +V FDRGG YHGR++ALADAARE GLQ Sbjct: 5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAKRALAKGIQQVVFDRGGNLYHGRVKALADAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 175 RTKREDRTAR-HSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +T R+ T R H RI++K+ GT ERPRL VFRS++H+Y QVIDD HTLASAST+ + + ++ + T E + VG +A+ L+ GI++V FDRGG YHGR+QALA+AARE GLQ Sbjct: 2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAERALQMGISRVVFDRGGKLYHGRVQALAEAAREAGLQ 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ K+ GT ERPRL V+RSNKH+Y QVIDD K TLA AST K L + +E + KVGE +AK +EKG+ V FDRGGY +HGR++ALADAARE GL+ Sbjct: 7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAKLAVEKGVKAVVFDRGGYLFHGRVKALADAARENGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC2 (50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.153e-28 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K R RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD TL SAST+ K +L + E + KVGE +AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPH (50S ribosomal protein L18 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28 Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 K E R +H+RI+ + GTP RPRL VFRSN H+Y Q+IDDT +TL SAST++K + EL+ ++ + + +G +IAK LEKGIT V FDRGG+ Y G++QALA+AARE GL Sbjct: 7 KSEVRIKKHNRIRNRFSGTPTRPRLAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVKAELEKTN--DVAAAAMLGTVIAKKALEKGITTVVFDRGGFIYQGKVQALAEAAREAGL 120
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC0 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH820) GN=rplR PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K R RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD TL SAST+ K +L + IE + KVGE +AK +E G+ +V FDRGGY YHGR++ALA+AARE GLQ Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEXGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEM4 (50S ribosomal protein L18 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplR PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28 Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH I+KKI GT ERPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L + E +++VG++I K +EKGI KV FDRGGY YHGR+ LA+ ARE GL+ Sbjct: 11 RKKRHLSIRKKIYGTVERPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLE 121 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |