CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACIBL (50S ribosomal protein L18 OS=Acidobacteria bacterium (strain Ellin345) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  205 HSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            HSRI+KK++GTPERPRL V+RS  HLYVQVIDD+K  TL +A+T++   + E    +G  +  +K++G+ IA+   +KGI KV FDRGGY YHGRI+ALADAARE GL+
Sbjct:   15 HSRIRKKMEGTPERPRLNVYRSTNHLYVQVIDDSKGATLVAANTLEFGEAKEGKRPTGGNLSAAKQLGKAIAERAKQKGINKVVFDRGGYLYHGRIKALADAAREGGLE 123          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEPX (50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+P  + E R  RH R++KK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGL 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEP3 (50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  166 TRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T+P  + E R  RH R++KK+ GTPERPRL VFRS KH+Y Q+IDDTK HTL  AST+   +      + G   + +K VGE+IAK  LEKGI  V FDRGGY YHG ++ LADAAR+ GL
Sbjct:    3 TKPN-RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELR---GIAKGANKQSAKLVGELIAKRALEKGIKDVVFDRGGYIYHGVVKELADAARQAGL 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNPW (50S ribosomal protein L18 OS=Synechococcus sp. (strain WH7803) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++++    RH R+++ + GT +RPRL VFRSN H+Y QVIDD    TL SAST+ K +   L  ++G T + S  VGE++AK  L KGI +V FDRGG  YHGR++ALADAARE GLQ
Sbjct:    5 SRKQQTQKRHRRLRRHLSGTADRPRLAVFRSNSHIYAQVIDDAAQSTLCSASTLDKDLRTSLT-ATGSTCDASVAVGELVAKRALAKGIQQVVFDRGGNLYHGRVKALADAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNJB (50S ribosomal protein L18 OS=Synechococcus sp. GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  175 RTKREDRTAR-HSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +T R+  T R H RI++K+ GT ERPRL VFRS++H+Y QVIDD   HTLASAST+ + + ++   +   T E +  VG  +A+  L+ GI++V FDRGG  YHGR+QALA+AARE GLQ
Sbjct:    2 KTSRKITTQRRHRRIRRKVFGTAERPRLAVFRSHRHIYAQVIDDVAQHTLASASTLDRELREKFKETGTATQEAAALVGRSVAERALQMGISRVVFDRGGKLYHGRVQALAEAAREAGLQ 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_MACCJ (50S ribosomal protein L18 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ K+ GT ERPRL V+RSNKH+Y QVIDD K  TLA AST  K     L   +   +E + KVGE +AK  +EKG+  V FDRGGY +HGR++ALADAARE GL+
Sbjct:    7 KNKVRMKRHARVRSKLAGTTERPRLNVYRSNKHIYAQVIDDVKGVTLAQASTQDK----NLGLETTSNVEAAAKVGEAVAKLAVEKGVKAVVFDRGGYLFHGRVKALADAARENGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC2 (50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.153e-28
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +     E + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPH (50S ribosomal protein L18 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            K E R  +H+RI+ +  GTP RPRL VFRSN H+Y Q+IDDT  +TL SAST++K +  EL+ ++   +  +  +G +IAK  LEKGIT V FDRGG+ Y G++QALA+AARE GL
Sbjct:    7 KSEVRIKKHNRIRNRFSGTPTRPRLAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVKAELEKTN--DVAAAAMLGTVIAKKALEKGITTVVFDRGGFIYQGKVQALAEAAREAGL 120          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACC0 (50S ribosomal protein L18 OS=Bacillus cereus (strain AH820) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL VFRSN+H+Y QVIDD    TL SAST+ K    +L  +    IE + KVGE +AK  +E G+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNIEAATKVGESVAKRAVEXGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEM4 (50S ribosomal protein L18 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplR PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH  I+KKI GT ERPRLCV++S KH+Y Q+IDD K HTL +AST+ K + + L  +     E +++VG++I K  +EKGI KV FDRGGY YHGR+  LA+ ARE GL+
Sbjct:   11 RKKRHLSIRKKIYGTVERPRLCVYKSEKHIYAQIIDDDKGHTLVAASTLDKELRETLKKTWNK--EAAREVGKLIGKRAIEKGIKKVVFDRGGYRYHGRVAELAEGAREAGLE 121          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ACIBL6.759e-2957.8050S ribosomal protein L18 OS=Acidobacteria bacteri... [more]
RL18_THEPX8.828e-2955.3750S ribosomal protein L18 OS=Thermoanaerobacter sp... [more]
RL18_THEP38.828e-2955.3750S ribosomal protein L18 OS=Thermoanaerobacter ps... [more]
RL18_SYNPW8.828e-2952.5450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]
RL18_SYNJB8.828e-2952.5050S ribosomal protein L18 OS=Synechococcus sp. GN=... [more]
RL18_MACCJ8.828e-2954.7050S ribosomal protein L18 OS=Macrococcus caseolyti... [more]
RL18_BACC21.153e-2854.7050S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_CLOPH1.506e-2853.4550S ribosomal protein L18 OS=Clostridium phytoferm... [more]
RL18_BACC01.506e-2854.7050S ribosomal protein L18 OS=Bacillus cereus (stra... [more]
RL18_THEM41.967e-2853.9850S ribosomal protein L18 OS=Thermosipho melanesie... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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