CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOBA (50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K+ RT RH R++KK+ GTP+RPRL VFRS K++Y Q+IDD T+ +AS++ K S ++G E +K VG +AK +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+ Sbjct: 7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFS-----TNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLK 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACWK (50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplR PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K R RH+R++ K+ GT ERPRL V+RSN+H+Y QVIDD TL SAST+ K +L + E + KVGE +AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOAB (50S ribosomal protein L18 OS=Clostridium acetobutylicum GN=rplR PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 3.355e-28 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH R++ KI GTPERPRL V+RS K++Y QVIDD TL SAST+ K S + +G E +K VG ++AK L+KGI +V FDRGGY YHGRI+ LA+AARE GL+ Sbjct: 4 KVQSRKRRHLRVRNKISGTPERPRLAVYRSEKNIYAQVIDDVNGTTLVSASTLDKDFSAK----AGSNKEAAKLVGGIVAKKALDKGIKQVVFDRGGYIYHGRIKELAEAAREAGLE 116
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACP2 (50S ribosomal protein L18 OS=Bacillus pumilus (strain SAFR-032) GN=rplR PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 3.355e-28 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 +K R RH+R++ K+ GT ERPRL VFRSNK++Y QVIDD TL SAST+ K +L + + KVGE++AK +EKGI+ V FDRGGY YHGR++ALA+AARE GL+ Sbjct: 6 SKNATRLKRHARVRAKLSGTAERPRLNVFRSNKNIYAQVIDDVNGVTLVSASTLDK----DLKIENSSDAAAATKVGELVAKRAVEKGISNVVFDRGGYLYHGRVKALAEAAREAGLK 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPS (50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplR PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++E R RH R++KK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+ Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPE (50S ribosomal protein L18 OS=Clostridium perfringens GN=rplR PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++E R RH R++KK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+ Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOP1 (50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 ++E R RH R++KK+ GTPERPRL V+RS K++Y Q+IDD TL +AS++ K I G E +K VGE++AK +EKGI V FDRGGY YHGR++ALA ARE GL+ Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNY3 (50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T++ RH R+++ + GT ERPRL VFRSN H+Y QVIDD HTLA+AST+ + L SS T E S +VG+++A+ + KGI +V FDRGG YHGR++ALA+AARE GL Sbjct: 4 TRKSATQRRHRRLRRHLSGTSERPRLAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSL--SSTATQEASAEVGKLVAQRAIAKGINQVVFDRGGKLYHGRVKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAES (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K TLA AS+ K I++ +S ++++ VG+ IAK +KGI ++ FDRGGY YHGR++ALADAARE GL+ Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAEQ (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28 Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 K + R RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K TLA AS+ K I++ +S ++++ VG+ IAK +KGI ++ FDRGGY YHGR++ALADAARE GL+ Sbjct: 7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLE 119 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |