CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOBA (50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K+  RT RH R++KK+ GTP+RPRL VFRS K++Y Q+IDD    T+ +AS++ K  S     ++G   E +K VG  +AK  +EKGIT+V FDRGGY YHGR+Q LA+ ARE GL+
Sbjct:    7 KKASRTKRHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFS-----TNGGNKEGAKLVGAAVAKKAIEKGITEVVFDRGGYVYHGRVQELAEGAREAGLK 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACWK (50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.568e-28
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K   R  RH+R++ K+ GT ERPRL V+RSN+H+Y QVIDD    TL SAST+ K    +L  +     E + KVGE +AK  +EKG+ +V FDRGGY YHGR++ALA+AARE GLQ
Sbjct:    7 KNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDK----DLALNGTSNTEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQ 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOAB (50S ribosomal protein L18 OS=Clostridium acetobutylicum GN=rplR PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.355e-28
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH R++ KI GTPERPRL V+RS K++Y QVIDD    TL SAST+ K  S +    +G   E +K VG ++AK  L+KGI +V FDRGGY YHGRI+ LA+AARE GL+
Sbjct:    4 KVQSRKRRHLRVRNKISGTPERPRLAVYRSEKNIYAQVIDDVNGTTLVSASTLDKDFSAK----AGSNKEAAKLVGGIVAKKALDKGIKQVVFDRGGYIYHGRIKELAEAAREAGLE 116          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACP2 (50S ribosomal protein L18 OS=Bacillus pumilus (strain SAFR-032) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.355e-28
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +K   R  RH+R++ K+ GT ERPRL VFRSNK++Y QVIDD    TL SAST+ K    +L   +      + KVGE++AK  +EKGI+ V FDRGGY YHGR++ALA+AARE GL+
Sbjct:    6 SKNATRLKRHARVRAKLSGTAERPRLNVFRSNKNIYAQVIDDVNGVTLVSASTLDK----DLKIENSSDAAAATKVGELVAKRAVEKGISNVVFDRGGYLYHGRVKALAEAAREAGLK 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPS (50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++E R  RH R++KK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I        G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOPE (50S ribosomal protein L18 OS=Clostridium perfringens GN=rplR PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++E R  RH R++KK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I        G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CLOP1 (50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            ++E R  RH R++KK+ GTPERPRL V+RS K++Y Q+IDD    TL +AS++ K I        G   E +K VGE++AK  +EKGI  V FDRGGY YHGR++ALA  ARE GL+
Sbjct:    7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIE-----VKGSNKEAAKLVGELVAKRAIEKGINDVVFDRGGYVYHGRVEALASGAREAGLK 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNY3 (50S ribosomal protein L18 OS=Synechocystis sp. (strain PCC 6803) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            T++     RH R+++ + GT ERPRL VFRSN H+Y QVIDD   HTLA+AST+   +   L  SS  T E S +VG+++A+  + KGI +V FDRGG  YHGR++ALA+AARE GL
Sbjct:    4 TRKSATQRRHRRLRRHLSGTSERPRLAVFRSNDHIYAQVIDDVAQHTLAAASTLDPDLKKSL--SSTATQEASAEVGKLVAQRAIAKGINQVVFDRGGKLYHGRVKALAEAAREAGL 118          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAES (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K  TLA AS+  K I++    +S   ++++  VG+ IAK   +KGI ++ FDRGGY YHGR++ALADAARE GL+
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_STAEQ (50S ribosomal protein L18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplR PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            K + R  RH+R++ K+ GT E+PRL V+RSNKH+Y Q+IDD K  TLA AS+  K I++    +S   ++++  VG+ IAK   +KGI ++ FDRGGY YHGR++ALADAARE GL+
Sbjct:    7 KNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQDKDIAN----TSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLE 119          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_CLOBA2.568e-2852.1450S ribosomal protein L18 OS=Clostridium botulinum... [more]
RL18_BACWK2.568e-2853.8550S ribosomal protein L18 OS=Bacillus weihenstepha... [more]
RL18_CLOAB3.355e-2854.7050S ribosomal protein L18 OS=Clostridium acetobuty... [more]
RL18_BACP23.355e-2853.3950S ribosomal protein L18 OS=Bacillus pumilus (str... [more]
RL18_CLOPS4.381e-2852.1450S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_CLOPE4.381e-2852.1450S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_CLOP14.381e-2852.1450S ribosomal protein L18 OS=Clostridium perfringe... [more]
RL18_SYNY39.760e-2852.1450S ribosomal protein L18 OS=Synechocystis sp. (st... [more]
RL18_STAES9.760e-2851.2850S ribosomal protein L18 OS=Staphylococcus epider... [more]
RL18_STAEQ9.760e-2851.2850S ribosomal protein L18 OS=Staphylococcus epider... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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