CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_JANMA (NADH-quinone oxidoreductase subunit D OS=Janthinobacterium sp. (strain Marseille) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L+S+G+N+PYR KIRAPG  HLQGLD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_HERAR (NADH-quinone oxidoreductase subunit D OS=Herminiimonas arsenicoxydans GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L+S+G+N+PYR KIRAPG  HLQGLD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pan troglodytes GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GEVDR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GEVDR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GEVDR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Bos taurus GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GEVDR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BORA1 (NADH-quinone oxidoreductase subunit D OS=Bordetella avium (strain 197N) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHLQ LD MS+ HM AD VTIIGTQDIV GE+DR
Sbjct:  362 FGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Rattus norvegicus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GE+DR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Mus musculus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL GLD MSK HM ADVV IIGTQDIV GE+DR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS++PYR KI+APG +HLQGL+ MSK HM ADVVTIIGTQDIV GEVDR
Sbjct:  340 FGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_JANMA3.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Janthinob... [more]
NUOD_HERAR3.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Herminiim... [more]
NDUS2_PANTR5.052e-1878.95NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_HUMAN5.052e-1878.95NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_GORGO5.052e-1878.95NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_BOVIN5.052e-1878.95NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOD_BORA16.598e-1873.68NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NDUS2_RAT6.598e-1877.19NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_MOUSE6.598e-1877.19NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_RECAM8.618e-1877.19NADH-ubiquinone oxidoreductase 49 kDa subunit OS=R... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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