CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICAH (NADH-quinone oxidoreductase subunit D OS=Rickettsia akari (strain Hartford) GN=nuoD PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G N PYR +I++PG AHLQGLD MSK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOCS (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+G+NRPYR KIR  G +HLQ +D MSK HM AD V IIG+ DIV GE+DR
Sbjct:  342 FGVYLVSDGTNRPYRCKIRPTGFSHLQAMDFMSKGHMLADTVAIIGSMDIVFGEIDR 398          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_PHEZH (NADH-quinone oxidoreductase subunit D OS=Phenylobacterium zucineum (strain HLK1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVSNG+N+PYR KIRAPG  HLQ +D M++ HM ADV  I+G+ DIV GE+DR
Sbjct:  355 FGVYLVSNGTNKPYRCKIRAPGYPHLQAMDWMNRGHMLADVSAILGSLDIVFGEIDR 411          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_GLUDA (NADH-quinone oxidoreductase subunit D OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoD PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++GSNRPYR KIR  G AHLQ +D MS+ HM AD V IIG+ D+V GE+DR
Sbjct:  360 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 416          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_AZOSE (NADH-quinone oxidoreductase subunit D OS=Azoarcus sp. (strain EbN1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+ VS+G+N+PYR K+RAPG AHL  +D +++ HM ADVV IIGT D+V GE+DR
Sbjct:  361 FGVYAVSDGANKPYRLKLRAPGFAHLAAMDEIARGHMIADVVAIIGTMDVVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_DICDI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Dictyostelium discoideum GN=nad7 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L +N + +PYR +I+APG  HLQGL+ MSK H+ ADVVT+IGTQDIV GEVDR
Sbjct:  350 FGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_DICCI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Dictyostelium citrinum GN=nad7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L +N + +PYR +I+APG  HLQGL+ MSK H+ ADVVT+IGTQDIV GEVDR
Sbjct:  350 FGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS5 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=nuoD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+NRPYR KIRAPG  HLQ +D ++K H+ ADV  IIGT D+V GE+DR
Sbjct:  346 FGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS4 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=nuoD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+NRPYR KIRAPG  HLQ +D ++K H+ ADV  IIGT D+V GE+DR
Sbjct:  348 FGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 404          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS1 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=nuoD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+NRPYR KIRAPG  HLQ +D ++K H+ ADV  IIGT D+V GE+DR
Sbjct:  346 FGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_RICAH1.165e-1466.67NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RHOCS1.165e-1466.67NADH-quinone oxidoreductase subunit D OS=Rhodospir... [more]
NUOD_PHEZH1.165e-1464.91NADH-quinone oxidoreductase subunit D OS=Phenyloba... [more]
NUOD_GLUDA1.165e-1464.91NADH-quinone oxidoreductase subunit D OS=Gluconace... [more]
NUOD_AZOSE1.165e-1461.40NADH-quinone oxidoreductase subunit D OS=Azoarcus ... [more]
NDUS2_DICDI1.165e-1464.91NADH-ubiquinone oxidoreductase 49 kDa subunit OS=D... [more]
NDUS2_DICCI1.165e-1464.91NADH-ubiquinone oxidoreductase 49 kDa subunit OS=D... [more]
NUOD_RHOS51.521e-1463.16NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_RHOS41.521e-1463.16NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_RHOS11.521e-1463.16NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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