CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NQO4_PARDE (NADH-quinone oxidoreductase subunit 4 OS=Paracoccus denitrificans GN=nqo4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+N+P+R K+RAPG AHLQ +D MS+ HM ADV  II T DIV GEVDR
Sbjct:  356 FGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOP5 (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisA53) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLVS+G+N+PY+ KIRAPG AHLQ +D +++ H+ ADV  I+G+ DIV GEVDR
Sbjct:  340 FGVFLVSDGTNKPYKCKIRAPGFAHLQAMDFVTRGHLLADVSAILGSLDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ANAPZ (NADH-quinone oxidoreductase subunit D OS=Anaplasma phagocytophilum (strain HZ) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 34/57 (59.65%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+N+PYR +IR+PG AHLQ +D+M++ HM AD+  IIG+ DIV GE+DR
Sbjct:  339 FGVYIVSDGTNKPYRCRIRSPGFAHLQAIDAMARGHMLADLPVIIGSLDIVFGEIDR 395          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_JANSC (NADH-quinone oxidoreductase subunit D OS=Jannaschia sp. (strain CCS1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLV++G+N+PYR K+RAPG AHLQ +D + K H  ADV  ++G+ DIV GEVDR
Sbjct:  356 FGVFLVADGTNKPYRAKLRAPGFAHLQAMDYLCKGHQLADVSAVLGSLDIVFGEVDR 412          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_HYPNA (NADH-quinone oxidoreductase subunit D OS=Hyphomonas neptunium (strain ATCC 15444) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+NRPYR KIRAPG  HLQ +D + K H  ADV  ++GT DIV GE+DR
Sbjct:  336 FGVYLVADGTNRPYRAKIRAPGYPHLQAMDYLCKGHQLADVSAVLGTLDIVFGEIDR 392          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BRASB (NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GSN+PY+ KIRAPG AHLQ +D + + H+ ADV  I+G+ DIV GEVDR
Sbjct:  342 FGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BART1 (NADH-quinone oxidoreductase subunit D OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+G+N+PYR K+RAPG AHLQ +D +++ HM AD   I+G+ DIV GEVDR
Sbjct:  340 FGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BARHE (NADH-quinone oxidoreductase subunit D OS=Bartonella henselae GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+G+N+PYR K+RAPG AHLQ +D +++ HM AD   I+G+ DIV GEVDR
Sbjct:  340 FGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BARBK (NADH-quinone oxidoreductase subunit D OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+G+N+PYR K+RAPG AHLQ +D +++ HM AD   I+G+ DIV GEVDR
Sbjct:  340 FGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPS (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisB5) GN=nuoD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GSN+PY+ KIRAPG AHLQ +D + + H+ ADV  I+G+ DIV GEVDR
Sbjct:  360 FGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 416          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NQO4_PARDE3.389e-1464.91NADH-quinone oxidoreductase subunit 4 OS=Paracoccu... [more]
NUOD_RHOP54.426e-1463.16NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_ANAPZ4.426e-1459.65NADH-quinone oxidoreductase subunit D OS=Anaplasma... [more]
NUOD_JANSC5.780e-1461.40NADH-quinone oxidoreductase subunit D OS=Jannaschi... [more]
NUOD_HYPNA5.780e-1461.40NADH-quinone oxidoreductase subunit D OS=Hyphomona... [more]
NUOD_BRASB5.780e-1463.16NADH-quinone oxidoreductase subunit D OS=Bradyrhiz... [more]
NUOD_BART15.780e-1461.40NADH-quinone oxidoreductase subunit D OS=Bartonell... [more]
NUOD_BARHE5.780e-1461.40NADH-quinone oxidoreductase subunit D OS=Bartonell... [more]
NUOD_BARBK5.780e-1461.40NADH-quinone oxidoreductase subunit D OS=Bartonell... [more]
NUOD_RHOPS7.550e-1463.16NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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