CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_ACACA (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Acanthamoeba castellanii GN=NAD7 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.126e-17
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+GSN+PYR KI+APG  HLQ L+SMSK HM ADVVTIIGTQDIV GE+DR
Sbjct:  345 FGVYVVSDGSNKPYRCKIKAPGFLHLQSLNSMSKGHMIADVVTIIGTQDIVFGEIDR 401          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_THIDA (NADH-quinone oxidoreductase subunit D OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.470e-17
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL+ LD MS+ HM ADVV IIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRMKIRAPGFAHLEALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BORPD (NADH-quinone oxidoreductase subunit D OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.470e-17
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHLQ LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  362 FGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.507e-17
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GS+RPYR KI+APG AHL  LD MSK HM ADVV IIGTQDIV GEVDR
Sbjct:  407 FGVYLVSDGSSRPYRCKIKAPGFAHLASLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BORPE (NADH-quinone oxidoreductase subunit D OS=Bordetella pertussis GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LV++G+N+PYR KIRAPG AHLQ LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  362 FGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BORPA (NADH-quinone oxidoreductase subunit D OS=Bordetella parapertussis GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LV++G+N+PYR KIRAPG AHLQ LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  362 FGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BORBR (NADH-quinone oxidoreductase subunit D OS=Bordetella bronchiseptica GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LV++G+N+PYR KIRAPG AHLQ LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  362 FGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_DECAR (NADH-quinone oxidoreductase subunit D OS=Dechloromonas aromatica (strain RCB) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ VS+G+N+PYR KIRAPG  HL GLD MS+ HM ADVVTIIG+QDIV GE+DR
Sbjct:  361 FGIYFVSDGANKPYRMKIRAPGFVHLAGLDEMSRGHMIADVVTIIGSQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURP8 (NADH-quinone oxidoreductase subunit D OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GEVDR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_CAFRO (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cafeteria roenbergensis GN=NAD7 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = -2
Query:  349 GVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 516
            GVFL+S+GSN+P+R KI+APG  HLQ L  M+KHHM ADVVTIIGTQDIV GEVDR
Sbjct:  343 GVFLISDGSNQPFRCKIKAPGFFHLQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NDUS2_ACACA1.126e-1775.44NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]
NUOD_THIDA1.470e-1771.93NADH-quinone oxidoreductase subunit D OS=Thiobacil... [more]
NUOD_BORPD1.470e-1771.93NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NDUS2_PONPY2.507e-1777.19NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOD_BORPE3.275e-1770.18NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_BORPA3.275e-1770.18NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_BORBR3.275e-1770.18NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_DECAR4.277e-1770.18NADH-quinone oxidoreductase subunit D OS=Dechlorom... [more]
NUOD_BURP84.277e-1771.93NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NDUS2_CAFRO4.277e-1775.00NADH-ubiquinone oxidoreductase 49 kDa subunit OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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