CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_FRATM (NADH-quinone oxidoreductase subunit D OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++ S+G+N+PYR K+RAPG AH+  +D +   HM AD   II T D+V G+VDR
Sbjct:  361 FGVYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_FRATH (NADH-quinone oxidoreductase subunit D OS=Francisella tularensis subsp. holarctica (strain LVS) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++ S+G+N+PYR K+RAPG AH+  +D +   HM AD   II T D+V G+VDR
Sbjct:  361 FGVYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_FRATF (NADH-quinone oxidoreductase subunit D OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++ S+G+N+PYR K+RAPG AH+  +D +   HM AD   II T D+V G+VDR
Sbjct:  361 FGVYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_FRAT1 (NADH-quinone oxidoreductase subunit D OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++ S+G+N+PYR K+RAPG AH+  +D +   HM AD   II T D+V G+VDR
Sbjct:  361 FGVYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NOVAD (NADH-quinone oxidoreductase subunit D OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GSN+PYR KIR    +HLQ +D M K HM  D   I+G  D+V GE DR
Sbjct:  347 FGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMCKGHMLPDATAILGAIDVVFGECDR 403          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_SPHWW (NADH-quinone oxidoreductase subunit D OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GSN+PYR KIR    +HLQ +D M K HM AD   I+   D+V GE DR
Sbjct:  350 FGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAILSAIDVVFGECDR 406          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ERYLH (NADH-quinone oxidoreductase subunit D OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+N+PYR KIR    +HLQ +D MSK HM  D   I+G  D+V GE DR
Sbjct:  347 FGVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_FRATM3.507e-1152.63NADH-quinone oxidoreductase subunit D OS=Francisel... [more]
NUOD_FRATH3.507e-1152.63NADH-quinone oxidoreductase subunit D OS=Francisel... [more]
NUOD_FRATF3.507e-1152.63NADH-quinone oxidoreductase subunit D OS=Francisel... [more]
NUOD_FRAT13.507e-1152.63NADH-quinone oxidoreductase subunit D OS=Francisel... [more]
NUOD_NOVAD4.580e-1156.14NADH-quinone oxidoreductase subunit D OS=Novosphin... [more]
NUOD_SPHWW5.982e-1156.14NADH-quinone oxidoreductase subunit D OS=Sphingomo... [more]
NUOD_ERYLH5.982e-1154.39NADH-quinone oxidoreductase subunit D OS=Erythroba... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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