CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURTA (NADH-quinone oxidoreductase subunit D OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURPS (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURP6 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 668) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURP1 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 1710b) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURP0 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 1106a) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURMS (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain SAVP1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURMA (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURM9 (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain NCTC 10229) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURM7 (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain NCTC 10247) GN=nuoD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_THICR (NADH-quinone oxidoreductase subunit D OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG+++VS+G+N+PYR K+RAPG AHL  LD M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  361 FGIYMVSDGANKPYRLKVRAPGFAHLASLDEMAKGHMIADVVAIIGTQDIVFGEVDR 417
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_BURTA5.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURPS5.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURP65.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURP15.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURP05.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURMS5.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURMA5.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURM95.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURM75.586e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_THICR7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Thiomicro... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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