CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURVG (NADH-quinone oxidoreductase subunit D OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURS3 (NADH-quinone oxidoreductase subunit D OS=Burkholderia sp. (strain 383) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURM1 (NADH-quinone oxidoreductase subunit D OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURCM (NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURCJ (NADH-quinone oxidoreductase subunit D OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURCH (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain HI2424) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURCC (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURCA (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURA4 (NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria (strain MC40-6) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
[Close]
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis GN=NAD7 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = -2 
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS GS+RPYR KI+APG +HLQGL+ M+  HM ADVVTIIGTQDIV GEVDR
Sbjct:  342 FGVYLVSKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTIIGTQDIVFGEVDR 398
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_BURVG7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURS37.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURM17.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCM7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCJ7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCH7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCC7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCA7.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURA47.295e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NDUS2_PYLLI7.295e-1775.44NADH-ubiquinone oxidoreductase 49 kDa subunit OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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