CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NITMU (NADH-quinone oxidoreductase subunit D OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N PYR KIRAPG AHL  LD MS+ HM ADVV IIGTQDIV GE+DR
Sbjct:  361 FGIYLISDGANMPYRMKIRAPGFAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURXL (NADH-quinone oxidoreductase subunit D OS=Burkholderia xenovorans (strain LB400) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GEVDR
Sbjct:  361 FGIYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_BURPP (NADH-quinone oxidoreductase subunit D OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=nuoD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG AHL  LD M++ HM AD VTIIGTQDIV GEVDR
Sbjct:  361 FGIYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_POLSQ (NADH-quinone oxidoreductase subunit D OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG  HL  +D MS+ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLISDGANKPYRMKIRAPGFVHLSAMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_POLNS (NADH-quinone oxidoreductase subunit D OS=Polynucleobacter necessarius (strain STIR1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG  HL  +D MS+ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYLISDGANKPYRMKIRAPGFVHLSSMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NITEU (NADH-quinone oxidoreductase subunit D OS=Nitrosomonas europaea GN=nuoD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG+++VS+G+N+PYR KIRAPG AHL  LD M+K HM AD+V IIGTQDIV GE+DR
Sbjct:  361 FGIYIVSDGANKPYRLKIRAPGFAHLAALDEMTKGHMIADLVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_CUPTR (NADH-quinone oxidoreductase subunit D OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=nuoD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG AHL  LD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_CHRVO (NADH-quinone oxidoreductase subunit D OS=Chromobacterium violaceum GN=nuoD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M+  HM ADVV IIGTQDIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGYAHLAALDEMATGHMIADVVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_METFK (NADH-quinone oxidoreductase subunit D OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.772e-16
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG AHL  LD M++ HM AD+V IIGTQDIV GE+DR
Sbjct:  361 FGIYLISDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICM5 (NADH-quinone oxidoreductase subunit D OS=Rickettsia massiliae (strain Mtu5) GN=nuoD PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MSK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_NITMU9.528e-1770.18NADH-quinone oxidoreductase subunit D OS=Nitrososp... [more]
NUOD_BURXL9.528e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURPP9.528e-1770.18NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_POLSQ1.244e-1666.67NADH-quinone oxidoreductase subunit D OS=Polynucle... [more]
NUOD_POLNS1.244e-1666.67NADH-quinone oxidoreductase subunit D OS=Polynucle... [more]
NUOD_NITEU1.625e-1668.42NADH-quinone oxidoreductase subunit D OS=Nitrosomo... [more]
NUOD_CUPTR1.625e-1668.42NADH-quinone oxidoreductase subunit D OS=Cupriavid... [more]
NUOD_CHRVO2.123e-1670.18NADH-quinone oxidoreductase subunit D OS=Chromobac... [more]
NUOD_METFK2.772e-1666.67NADH-quinone oxidoreductase subunit D OS=Methyloba... [more]
NUOD_RICM53.621e-1670.18NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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