CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICCN (NADH-quinone oxidoreductase subunit D OS=Rickettsia conorii GN=nuoD PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MSK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICBR (NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain RML369-C) GN=nuoD PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MSK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICB8 (NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain OSU 85-389) GN=nuoD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MSK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RALPJ (NADH-quinone oxidoreductase subunit D OS=Ralstonia pickettii (strain 12J) GN=nuoD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.729e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG  HL  LD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RUTMC (NADH-quinone oxidoreductase subunit D OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++L+S+G+N+PYR KIRAPG AHL  ++ M++ HM +DVVTIIGTQDIV GE+DR
Sbjct:  361 FGIYLISDGANKPYRVKIRAPGFAHLAAMNEMARGHMLSDVVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RALEJ (NADH-quinone oxidoreductase subunit D OS=Ralstonia eutropha (strain JMP134) GN=nuoD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG  HL  LD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RALEH (NADH-quinone oxidoreductase subunit D OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nuoD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG  HL  LD M+K HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICRS (NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MS+ H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICRO (NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii (strain Iowa) GN=nuoD PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD MS+ H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICFE (NADH-quinone oxidoreductase subunit D OS=Rickettsia felis GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G NRPYR +I+APG AHLQGLD +SK H+ ADV+TII T DIV GE+DR
Sbjct:  335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFISKGHLMADVITIIATLDIVFGEIDR 391          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_RICCN3.621e-1670.18NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICBR3.621e-1670.18NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICB83.621e-1670.18NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RALPJ4.729e-1666.67NADH-quinone oxidoreductase subunit D OS=Ralstonia... [more]
NUOD_RUTMC6.176e-1664.91NADH-quinone oxidoreductase subunit D OS=Ruthia ma... [more]
NUOD_RALEJ6.176e-1666.67NADH-quinone oxidoreductase subunit D OS=Ralstonia... [more]
NUOD_RALEH6.176e-1666.67NADH-quinone oxidoreductase subunit D OS=Ralstonia... [more]
NUOD_RICRS1.053e-1568.42NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICRO1.053e-1568.42NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICFE1.053e-1568.42NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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