CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RALME (NADH-quinone oxidoreductase subunit D OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG  HL  LD M++ HM AD VTIIGTQDIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFVHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_METPP (NADH-quinone oxidoreductase subunit D OS=Methylibium petroleiphilum (strain PM1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  +D MS+ HM AD V +IGT DIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_WOLTR (NADH-quinone oxidoreductase subunit D OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+NRPYR +IRAPG AHLQ LD M+K HM ADV  IIG+ DIV GE+DR
Sbjct:  334 FGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_WOLPM (NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis wMel GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+NRPYR +IRAPG AHLQ LD M+K HM ADV  IIG+ DIV GE+DR
Sbjct:  334 FGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_VESOH (NADH-quinone oxidoreductase subunit D OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L+S+G+N+PYR KIRAPG +HL  ++ M++ HM +DVVTIIGTQD+V GE+DR
Sbjct:  361 FGVYLISDGANKPYRVKIRAPGFSHLAAMNEMTRGHMLSDVVTIIGTQDVVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_WOLPP (NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+NRPYR +IRAPG AHLQ LD M+K HM AD+  IIG+ DIV GE+DR
Sbjct:  334 FGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_VEREI (NADH-quinone oxidoreductase subunit D OS=Verminephrobacter eiseniae (strain EF01-2) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD V IIGT DIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHORT (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+G+NRPYR KIR+PG  HLQGLD MS+ HM ADVV  IG+ D+V GE+DR
Sbjct:  336 FGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANIGSIDVVFGEIDR 392          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NITEC (NADH-quinone oxidoreductase subunit D OS=Nitrosomonas eutropha (strain C91) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++++S+G+N PYR KIRAPG AHL  +D M++ HM AD+V IIGTQDIV GE+DR
Sbjct:  361 FGIYIISDGANMPYRLKIRAPGFAHLAAMDEMARGHMIADLVAIIGTQDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ALHEH (NADH-quinone oxidoreductase subunit D OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG +++S+G+N+PYR K+RAPG AHL  +D M++ HM ADVV IIGTQDIV GE+DR
Sbjct:  361 FGCYMISDGANKPYRVKLRAPGFAHLSAMDEMARGHMLADVVAIIGTQDIVFGEIDR 417          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_RALME1.053e-1564.91NADH-quinone oxidoreductase subunit D OS=Ralstonia... [more]
NUOD_METPP1.053e-1564.91NADH-quinone oxidoreductase subunit D OS=Methylibi... [more]
NUOD_WOLTR1.376e-1568.42NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_WOLPM1.376e-1568.42NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_VESOH1.376e-1563.16NADH-quinone oxidoreductase subunit D OS=Vesicomyo... [more]
NUOD_WOLPP1.797e-1566.67NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_VEREI1.797e-1566.67NADH-quinone oxidoreductase subunit D OS=Vermineph... [more]
NUOD_RHORT1.797e-1568.42NADH-quinone oxidoreductase subunit D OS=Rhodospir... [more]
NUOD_NITEC1.797e-1563.16NADH-quinone oxidoreductase subunit D OS=Nitrosomo... [more]
NUOD_ALHEH1.797e-1563.16NADH-quinone oxidoreductase subunit D OS=Alkalilim... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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