CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ACIAC (NADH-quinone oxidoreductase subunit D OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++LVS+G+N+PYR KIRAPG AHL  LD M++ HM AD V IIGT DIV GE+DR
Sbjct:  361 FGIYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NITOC (NADH-quinone oxidoreductase subunit D OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L+S+G+N+PYR K+RAPG AHL  +D M + HM ADVV IIGT DIV GE+DR
Sbjct:  361 FGVYLISDGANKPYRLKVRAPGFAHLAAMDEMVQGHMLADVVAIIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_MARMM (NADH-quinone oxidoreductase subunit D OS=Maricaulis maris (strain MCS10) GN=nuoD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVS+GSN+PYR KIRAPG AHL  +D MSK HM ADV  IIG+ D+V GE+DR
Sbjct:  346 FGVYLVSDGSNKPYRLKIRAPGFAHLAAMDYMSKGHMLADVSAIIGSLDVVFGEIDR 402          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_LEPCP (NADH-quinone oxidoreductase subunit D OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG++ +S+G+N+PYR KIRAPG AHL  LD MS+ HM AD V IIGT DIV GE+DR
Sbjct:  361 FGIYAISDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADAVAIIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ACISJ (NADH-quinone oxidoreductase subunit D OS=Acidovorax sp. (strain JS42) GN=nuoD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.065e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FG+++VS+G+N+PYR KIRAPG AHL  LD M++ HM AD V IIGT DIV GE+DR
Sbjct:  361 FGIYMVSDGANKPYRLKIRAPGFAHLATLDEMARGHMLADAVAIIGTMDIVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICPR (NADH-quinone oxidoreductase subunit D OS=Rickettsia prowazekii GN=nuoD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G N+PYR +I+APG AHLQGL+ MSK H+ ADV+TII T DIV GE+DR
Sbjct:  333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITIIATLDIVFGEIDR 389          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOCA (NADH-quinone oxidoreductase subunit D OS=Rhodobacter capsulatus GN=nuoD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+N+PYR KIRAPG AHLQ +D+++K H  ADV  IIGT D+V GE+DR
Sbjct:  357 FGVYLVADGTNKPYRAKIRAPGYAHLQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ROSDO (NADH-quinone oxidoreductase subunit D OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++G+N+PYR KIRAPG  HLQ +D MS+ H  ADV  IIGT D+V GE+DR
Sbjct:  351 FGVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 407          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_AZOSB (NADH-quinone oxidoreductase subunit D OS=Azoarcus sp. (strain BH72) GN=nuoD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+ VS+G+N+PYR K+RAPG AHL  +D +S+ HM ADVV IIGT D+V GE+DR
Sbjct:  361 FGVYAVSDGANKPYRLKLRAPGFAHLAAMDEISRGHMIADVVAIIGTMDVVFGEIDR 417          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ANAMM (NADH-quinone oxidoreductase subunit D OS=Anaplasma marginale (strain St. Maries) GN=nuoD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+NRPYR +IRAPG AHLQ +D+M++ HM AD+  IIG+ DIV GE+DR
Sbjct:  342 FGVYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 398          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_ACIAC1.797e-1566.67NADH-quinone oxidoreductase subunit D OS=Acidovora... [more]
NUOD_NITOC2.347e-1564.91NADH-quinone oxidoreductase subunit D OS=Nitrosoco... [more]
NUOD_MARMM2.347e-1568.42NADH-quinone oxidoreductase subunit D OS=Maricauli... [more]
NUOD_LEPCP2.347e-1564.91NADH-quinone oxidoreductase subunit D OS=Leptothri... [more]
NUOD_ACISJ3.065e-1564.91NADH-quinone oxidoreductase subunit D OS=Acidovora... [more]
NUOD_RICPR4.003e-1566.67NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RHOCA4.003e-1563.16NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_ROSDO5.228e-1563.16NADH-quinone oxidoreductase subunit D OS=Roseobact... [more]
NUOD_AZOSB5.228e-1563.16NADH-quinone oxidoreductase subunit D OS=Azoarcus ... [more]
NUOD_ANAMM5.228e-1563.16NADH-quinone oxidoreductase subunit D OS=Anaplasma... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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