CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_DINSH (NADH-quinone oxidoreductase subunit D OS=Dinoroseobacter shibae (strain DFL 12) GN=nuoD PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFL S+G+NRPYR KIRAPG  HLQ +D ++K H  ADV  IIGT D+V GE+DR
Sbjct:  348 FGVFLKSDGTNRPYRAKIRAPGYLHLQSMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RICTY (NADH-quinone oxidoreductase subunit D OS=Rickettsia typhi GN=nuoD PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S G N+PYR +I+APG AHLQGL+ MSK H+ +DV+TII T DIV GE+DR
Sbjct:  333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITIIATLDIVFGEIDR 389          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPB (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisB18) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLVS+GSN+PY+ KIRAPG AHLQ +D +S+ H+ ADV  I+G+ DIV GEVDR
Sbjct:  340 FGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFISRGHLLADVSAILGSLDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ORITI (NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi (strain Ikeda) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S+G+NRPYR +I+APG AHLQGLD M++ H  +D++TII T DIV GE+DR
Sbjct:  340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_ORITB (NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi (strain Boryong) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+L S+G+NRPYR +I+APG AHLQGLD M++ H  +D++TII T DIV GE+DR
Sbjct:  340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_OCHA4 (NADH-quinone oxidoreductase subunit D OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLVS+GSN+PYR K+RAPG AHLQ +D + + HM ADV  I+G+ DIV GEVDR
Sbjct:  340 FGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_EHRRW (NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+N+PYR +IRAPG AHLQ +D M+K HM AD+  IIG+ DIV GE+DR
Sbjct:  337 FGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_EHRRG (NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium (strain Gardel) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+N+PYR +IRAPG AHLQ +D M+K HM AD+  IIG+ DIV GE+DR
Sbjct:  337 FGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_EHRCR (NADH-quinone oxidoreductase subunit D OS=Ehrlichia chaffeensis (strain Arkansas) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV++VS+G+N+PYR +IRAPG AHLQ +D M+K HM AD+  IIG+ DIV GE+DR
Sbjct:  337 FGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_SILST (NADH-quinone oxidoreductase subunit D OS=Silicibacter sp. (strain TM1040) GN=nuoD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LV++GSN+PYR K+RAPG  HLQ +D ++K H  ADV  IIGT DIV GE+DR
Sbjct:  347 FGVYLVADGSNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 403          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NUOD_DINSH6.828e-1564.91NADH-quinone oxidoreductase subunit D OS=Dinoroseo... [more]
NUOD_RICTY8.918e-1564.91NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RHOPB8.918e-1566.67NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_ORITI8.918e-1563.16NADH-quinone oxidoreductase subunit D OS=Orientia ... [more]
NUOD_ORITB8.918e-1563.16NADH-quinone oxidoreductase subunit D OS=Orientia ... [more]
NUOD_OCHA48.918e-1566.67NADH-quinone oxidoreductase subunit D OS=Ochrobact... [more]
NUOD_EHRRW8.918e-1563.16NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_EHRRG8.918e-1563.16NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_EHRCR8.918e-1563.16NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_SILST1.165e-1463.16NADH-quinone oxidoreductase subunit D OS=Silicibac... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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