CX288880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27 Identity = 80/176 (45.45%), Postives = 90/176 (51.14%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQ VGWPPVRSFR+NIM VQ K EE D + A + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT GN MNE +NGSD V TYEDKDGDWMLVGDVPW+ Sbjct: 84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTA-----------------------------------------TGN--------NMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27 Identity = 80/176 (45.45%), Postives = 90/176 (51.14%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQ VGWPPVRSFR+NIM VQ K EE D + A + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT GN MNE +NGSD V TYEDKDGDWMLVGDVPW+ Sbjct: 84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTA-----------------------------------------TGN--------NMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.883e-26 Identity = 74/167 (44.31%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPPVRSFRKN++A + A VKVSMDGAPYLRK+D+ +YKSY ELS A MF+SFTI G CGS + +KL D L +YVPTYEDKDGDWMLVGDVPWE Sbjct: 98 KAQVVGWPPVRSFRKNVLAEK--------------CKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTI------------------------------------------GKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWE 203
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.212e-26 Identity = 69/167 (41.32%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPPVRS+RKN +A +G+++ +VKVSMDGAPYLRKVDLK Y SY++LS AL KMFS F G H T K +D + + D L +YV TYEDKD DWMLVGD+PW+ Sbjct: 125 KAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGR-------------SSSHKTSK---------------------------RDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWD 249
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25 Identity = 66/167 (39.52%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPPVR++RKN +A +G++K +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F G +D + D L +YV TYEDKD DWMLVGD+PW+ Sbjct: 115 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQ----------------------------------------SGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 239
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25 Identity = 66/167 (39.52%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPPVR++RKN +A +G++K +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F G +D + D L +YV TYEDKD DWMLVGD+PW+ Sbjct: 116 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQ----------------------------------------SGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 240
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.082e-25 Identity = 70/167 (41.92%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPP+RS+RKN MA + ++ A +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF FT G KD ++ES+ +YV TYEDKDGDWMLVGDVPWE Sbjct: 114 KAQVVGWPPIRSYRKNTMATNQLKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-------------------------------------------------KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWE 225
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.748e-24 Identity = 70/170 (41.18%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMA---VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +AQVVGWPP+RS+RKN MA ++ + E+ D K +VKVSMDGAPYLRKVDLK YK+Y+++S L KMF F+ G KE G++ KD +YV TYEDKDGDWMLVGDVPWE Sbjct: 121 KAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQ----GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTG-------------------------KE-----------------GAENQKD-------------GEYVLTYEDKDGDWMLVGDVPWE 231
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.143e-23 Identity = 68/168 (40.48%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +A+VVGWPPVRSFRKN +A + FVKV++DGAPYLRKVDL+ Y Y +L AL K FS FTI K +E KL+D +NG++YVPTYEDKDGDWMLVGDVPW+ Sbjct: 74 KARVVGWPPVRSFRKNALAAK-------------------FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTI-------------------------------------------------RKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.492e-23 Identity = 68/168 (40.48%), Postives = 84/168 (50.00%), Query Frame = 1 Query: 13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513 +A+VVGWPPVR+FRKN +A K FVKV++DGAPYLRKVDL+ Y+ Y +L AL K FS FTI +GN E KL+D ++G++YVPTYEDKDGDWMLVGDVPW+ Sbjct: 79 KARVVGWPPVRAFRKNALAALAAASSSKAK----------FVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTI---------------------------------------RKLGN----------EEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWK 187 The following BLAST results are available for this feature:
BLAST of CX288880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288880 ID=CX288880; Name=CX288880; organism=Citrus clementina; type=EST; length=612bpback to top |