CX288880

Overview
NameCX288880
Unique NameCX288880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27
Identity = 80/176 (45.45%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT                                           GN         MNE      +NGSD V TYEDKDGDWMLVGDVPW+
Sbjct:   84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTA-----------------------------------------TGN--------NMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27
Identity = 80/176 (45.45%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT                                           GN         MNE      +NGSD V TYEDKDGDWMLVGDVPW+
Sbjct:   84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTA-----------------------------------------TGN--------NMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.883e-26
Identity = 74/167 (44.31%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVRSFRKN++A +                  A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTI                                          G CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct:   98 KAQVVGWPPVRSFRKNVLAEK--------------CKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTI------------------------------------------GKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWE 203          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.212e-26
Identity = 69/167 (41.32%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVRS+RKN +A      +G+++          +VKVSMDGAPYLRKVDLK Y SY++LS AL KMFS F  G                 H T K                           +D + +    D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:  125 KAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGR-------------SSSHKTSK---------------------------RDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWD 249          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25
Identity = 66/167 (39.52%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G                                                 +D +      D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:  115 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQ----------------------------------------SGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 239          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25
Identity = 66/167 (39.52%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G                                                 +D +      D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:  116 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQ----------------------------------------SGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 240          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.082e-25
Identity = 70/167 (41.92%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPP+RS+RKN MA  +     ++ A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT G                                                 KD ++ES+        +YV TYEDKDGDWMLVGDVPWE
Sbjct:  114 KAQVVGWPPIRSYRKNTMATNQLKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-------------------------------------------------KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWE 225          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.748e-24
Identity = 70/170 (41.18%), Postives = 86/170 (50.59%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMA---VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPP+RS+RKN MA   ++ + E+ D K          +VKVSMDGAPYLRKVDLK YK+Y+++S  L KMF  F+ G                         KE                 G++  KD              +YV TYEDKDGDWMLVGDVPWE
Sbjct:  121 KAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQ----GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTG-------------------------KE-----------------GAENQKD-------------GEYVLTYEDKDGDWMLVGDVPWE 231          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.143e-23
Identity = 68/168 (40.48%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +A+VVGWPPVRSFRKN +A +                   FVKV++DGAPYLRKVDL+ Y  Y +L  AL  K FS FTI                                                  K   +E KL+D +NG++YVPTYEDKDGDWMLVGDVPW+
Sbjct:   74 KARVVGWPPVRSFRKNALAAK-------------------FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTI-------------------------------------------------RKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.492e-23
Identity = 68/168 (40.48%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +A+VVGWPPVR+FRKN +A          K          FVKV++DGAPYLRKVDL+ Y+ Y +L  AL  K FS FTI                                         +GN           E KL+D ++G++YVPTYEDKDGDWMLVGDVPW+
Sbjct:   79 KARVVGWPPVRAFRKNALAALAAASSSKAK----------FVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTI---------------------------------------RKLGN----------EEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWK 187          
The following BLAST results are available for this feature:
BLAST of CX288880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA13_ORYSJ2.225e-2745.45Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI2.225e-2745.45Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA11_ORYSJ1.883e-2644.31Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA19_ORYSJ3.212e-2641.32Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ1.221e-2539.52Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.221e-2539.52Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA17_ORYSJ2.082e-2541.92Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA3_ORYSJ8.748e-2441.18Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA1_ORYSJ1.143e-2340.48Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ1.492e-2340.48Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02006E01SK IF1 Citrus clementina cDNA clone C02006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288880 ID=CX288880; Name=CX288880; organism=Citrus clementina; type=EST; length=612bp
TTTTTTTTTTGCAGGGCACAAGTTGTGGGTTGGCCACCCGTTAGATCATT
CAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATACAAAAGCTA
CCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCATTG
GTACCTACATATAACTAACACAACCACTTTTTAATTAATTTCCTCCCATA
ATTCACACTACTCAAAAGTGCTTTTTTAAAGAAGTGATATAGTGGGTTTT
ATTTATTTAATTTGTTATGTATGTAGGTAACTGTGGGTCACAAGGGATGA
AGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGGCTCAGAT
TATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGA
TGTACCATGGGAGTAAGTTCATTCATTTCTATTGCGTTACATTAGAGTCA
GTACAACCAACCAATAGAATCATGACATGTATATAAAAACAGTCACGATG
TCATGTGTTGAT
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