CX288880

Overview
NameCX288880
Unique NameCX288880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.545e-23
Identity = 71/166 (42.77%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 510
            +AQVVGWPP+RS+RKN +  QK  EE +         N  +VKVSM GAPYLRK+DLK+YKSY EL  AL  MF                           KC F E            Y    G                 NGS+Y PTYEDKDGDWMLVGDVPW
Sbjct:   68 KAQVVGWPPIRSYRKNNVQ-QKKEEESEG--------NGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMF---------------------------KCIFGE------------YSEREG----------------YNGSEYAPTYEDKDGDWMLVGDVPW 169          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 67/167 (40.12%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQ+VGWPPVRS+RKN +  +K   EG             +VKVSMDGAPYLRK+DL +YK Y EL  +L  MF  F++G Y                     F +E                 G +G  DF+               PTYEDKDGDWMLVGDVPWE
Sbjct:   60 KAQIVGWPPVRSYRKNNVQTKKSESEGQGN----------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMF-KFSVGEY---------------------FERE-----------------GYKG-SDFV---------------PTYEDKDGDWMLVGDVPWE 161          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21
Identity = 68/166 (40.96%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 510
            + QVVGWPP+RSFRKN +  QK  E+GD            ++KVSM GAPYLRK+DLK+YKSY EL  AL  +F                           KC F E            Y    G  G                S+Y PTYEDKDGDWMLVGDVPW
Sbjct:   78 KVQVVGWPPIRSFRKNSLQ-QKKVEQGDGTGM--------YLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLF---------------------------KCTFGE------------YSEREGYNG----------------SEYAPTYEDKDGDWMLVGDVPW 179          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 65/167 (38.92%), Postives = 75/167 (44.91%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            + Q+VGWPPVRS RKN                     +V++VKVSMDGAPYLRK+DLK YK+Y EL  AL  MF    IG Y                                         C  +G K             GS +VPTYEDKDGDWMLVGDVPW+
Sbjct:   58 KTQIVGWPPVRSSRKN-------------------NNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMF-KVMIGEY-----------------------------------------CEREGYK-------------GSGFVPTYEDKDGDWMLVGDVPWD 150          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 62/172 (36.05%), Postives = 74/172 (43.02%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIM-----AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVR++R+N       A     + GD K          +VKVSMDGAPYLRKVDLK+ K Y+EL +AL  +F+                          KCF                     S G  D               +   YEDKDGD MLVGDVPWE
Sbjct:   86 KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFT--------------------------KCF-----------------SATASDGCSD-------------GQFAIAYEDKDGDLMLVGDVPWE 201          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 64/194 (32.99%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   22 VVGWPPVRSFRKNI-------MAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSD-YVPTYEDKDGDWMLVGDVPWE*VHSFLLRYIRVSTTNQ*NHDM 579
            VVGWPP+RSFR+N+        + ++ N+E D+KA          VK++MDG P  RKVDL++Y SYQ+LS A+ ++F  F                       QK                +     G QG +D +       LL+G+  Y   YED DGD ML GD+PW+ V    ++ +RV   ++  HDM
Sbjct:  168 VVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKR-PLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFL--------------------EAQK---------------DLSCAESGEQGAEDKI----FSGLLDGTGVYTLVYEDNDGDRMLAGDIPWK-VFVSTVKRLRVMRRSELPHDM 320          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 69/203 (33.99%), Postives = 86/203 (42.36%), Query Frame = 1
Query:   22 VVGWPPVRSFRKNIMA---------------------VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE*VHSFL--LRYIRVSTTN 561
            VVGWPP+R FR N +                      VQKD EEG+ K          +VKV+MDG    RKVDL  ++SY+ L+ AL  MF+  +IG                                           C S       N  KL+D  N ++Y  TYED+DGDWMLVGDVPWE   S +  LR +R S  N
Sbjct:  112 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRV-----AGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGL------------------------------------------CASHN----TNSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDAN 261          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 69/203 (33.99%), Postives = 86/203 (42.36%), Query Frame = 1
Query:   22 VVGWPPVRSFRKNIMA---------------------VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE*VHSFL--LRYIRVSTTN 561
            VVGWPP+R FR N +                      VQKD EEG+ K          +VKV+MDG    RKVDL  ++SY+ L+ AL  MF+  +IG                                           C S       N  KL+D  N ++Y  TYED+DGDWMLVGDVPWE   S +  LR +R S  N
Sbjct:  112 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRV-----AGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGL------------------------------------------CASHN----TNSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDAN 261          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 258
            +AQ+VGWPPVRS+RKN +  +K+  E + +          +VKVSMDGAPYLRK+DL  YK Y EL  AL  MF  F++G Y
Sbjct:   62 KAQIVGWPPVRSYRKNNIQSKKNESEHEGQGI--------YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMF-KFSVGEY 134          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 258
            + Q+VGWPPVRS RKN           +NK       NV++VKVSMDGAPYLRK+DLK+YK+Y EL  AL  MF  FT+G Y
Sbjct:   53 KTQIVGWPPVRSNRKN----------NNNK-------NVSYVKVSMDGAPYLRKIDLKMYKNYPELLKALENMF-KFTVGEY 116          
The following BLAST results are available for this feature:
BLAST of CX288880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AX22D_PHAAU2.545e-2342.77Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH6.269e-2240.12Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
AX22E_PHAAU1.069e-2140.96Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA2_ARATH1.182e-2038.92Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA24_ORYSJ5.492e-1836.05Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA18_ORYSJ4.649e-1732.99Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA10_ORYSJ1.036e-1633.99Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI1.036e-1633.99Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA3_ARATH3.332e-1551.22Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA1_ARATH3.332e-1554.88Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC02006E01SK IF1 Citrus clementina cDNA clone C02006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288880 ID=CX288880; Name=CX288880; organism=Citrus clementina; type=EST; length=612bp
TTTTTTTTTTGCAGGGCACAAGTTGTGGGTTGGCCACCCGTTAGATCATT
CAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATACAAAAGCTA
CCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCATTG
GTACCTACATATAACTAACACAACCACTTTTTAATTAATTTCCTCCCATA
ATTCACACTACTCAAAAGTGCTTTTTTAAAGAAGTGATATAGTGGGTTTT
ATTTATTTAATTTGTTATGTATGTAGGTAACTGTGGGTCACAAGGGATGA
AGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGGCTCAGAT
TATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGA
TGTACCATGGGAGTAAGTTCATTCATTTCTATTGCGTTACATTAGAGTCA
GTACAACCAACCAATAGAATCATGACATGTATATAAAAACAGTCACGATG
TCATGTGTTGAT
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