CX288880

Overview
NameCX288880
Unique NameCX288880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 62/189 (32.80%), Postives = 77/189 (40.74%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQ----------------KDNEEGDNKAXXXXXXNVA------FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVRS+RK+    Q                KD     N A      + A       VKVSMDGAPYLRK+DL++YK Y+EL +AL  MF  F+                                                 G  D  N S+         +  TY+DKDGD MLVGDVP++
Sbjct:   68 KAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFS-------------------------------------------------GAADGANPSE---------FAITYQDKDGDLMLVGDVPFD 198          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIM--------------AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 252
            +AQVVGWPPVRS+RK+ +              A   + ++ ++ A         FVKVSMDGAPYLRK+DLK+YK Y+EL +AL  MF  F+ G
Sbjct:   51 KAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGL----FVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGG 140          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 258
            +A++VGWPP+RS+RKN  +VQ+   +G             FVKVSMDGAPYLRKVDLK+Y  Y EL  AL  MF    IG Y
Sbjct:   75 KAKIVGWPPIRSYRKN--SVQEGEGDG------------IFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMF-KLAIGEY 141          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 258
            +A++VGWPP+RS+RKN +       E D            FVKVSMDGAPYLRK+DL++Y  Y EL  AL  MF   TIG Y
Sbjct:   68 KAKIVGWPPIRSYRKNSL------HEAD--------VGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMF-KLTIGEY 134          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIM--------AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 246
            + QVVGWPPV S+R++          A  K    G+            +VKVSMDGAPYLRKVDL++Y  Y+EL DAL  +F  F+
Sbjct:   62 KVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFS 147          
The following BLAST results are available for this feature:
BLAST of CX288880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA12_ORYSJ1.266e-1432.80Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA31_ORYSJ1.072e-1345.74Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
AX22B_PHAAU2.388e-1352.44Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA4_PEA1.548e-1250.00Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
IAA14_ORYSJ2.021e-1244.19Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006E01SK IF1 Citrus clementina cDNA clone C02006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288880 ID=CX288880; Name=CX288880; organism=Citrus clementina; type=EST; length=612bp
TTTTTTTTTTGCAGGGCACAAGTTGTGGGTTGGCCACCCGTTAGATCATT
CAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATACAAAAGCTA
CCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCATTG
GTACCTACATATAACTAACACAACCACTTTTTAATTAATTTCCTCCCATA
ATTCACACTACTCAAAAGTGCTTTTTTAAAGAAGTGATATAGTGGGTTTT
ATTTATTTAATTTGTTATGTATGTAGGTAACTGTGGGTCACAAGGGATGA
AGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGGCTCAGAT
TATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGA
TGTACCATGGGAGTAAGTTCATTCATTTCTATTGCGTTACATTAGAGTCA
GTACAACCAACCAATAGAATCATGACATGTATATAAAAACAGTCACGATG
TCATGTGTTGAT
back to top