CX290880

Overview
NameCX290880
Unique NameCX290880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.197e-30
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPLI YC LPAFCL+T +FI+PEISNYAS+ FI LFISIA TGILE++W GV I+DWWRNEQ WVIGG S+H F    G
Sbjct:  862 TSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQG 942          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.454e-30
Identity = 58/81 (71.60%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPLI YC LPA CLLT KFI+PEISNYA + FI LF SI ATGILE++W GVGI+DWWRNEQ WVIGG S+H F    G
Sbjct:  857 TSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQG 937          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.454e-30
Identity = 58/81 (71.60%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPLI YC LPA CLLT KFI+PEISNYA + FI LF SI ATGILE++W GVGI+DWWRNEQ WVIGG S+H F    G
Sbjct:  857 TSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQG 937          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.303e-30
Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCTLPA CLLTGKFI PE++N ASL F+ LFI I  TGILEM+W GV IDDWWRNEQ WVIGG SSH F    G
Sbjct:  874 TSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFVTGILEMRWSGVAIDDWWRNEQFWVIGGVSSHLFAVFQG 954          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PL+ YCTLPA CLLTGKFI+P IS +ASL FI LFISI ATGILEM+W GV I++WWRNEQ WVIGG S+H F  + G
Sbjct:  836 TSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 916          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PL+ YCTLPA CLLTGKFI+P IS +ASL FI LFISI ATGILEM+W GV I++WWRNEQ WVIGG S+H F  + G
Sbjct:  836 TSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 916          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.707e-29
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL++YCTLPA CL T +FI+P+ISN AS+ F+ LF+SI ATGILEM+W GVGID+WWRNEQ WVIGG S+H F    G
Sbjct:  847 TSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQG 927          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.876e-29
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCT+PA CLLTGKFI+P ++N AS+ FI LF+SI ATG+LE++W GV I+DWWRNEQ WVIGG S+H F    G
Sbjct:  844 TSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQG 924          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PLI YC LPA CLLTGKFI+P +SN A++ F+GLFISI  T +LE++W G+GI+DWWRNEQ WVIGG S+H F    G
Sbjct:  771 TSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQG 851          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PLI YC LPA CLLTGKFI+P +SN A++ F+GLFISI  T +LE++W G+GI+DWWRNEQ WVIGG S+H F    G
Sbjct:  771 TSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQG 851          
The following BLAST results are available for this feature:
BLAST of CX290880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA1_ARATH3.197e-3071.60Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA1_ORYSJ5.454e-3071.60Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI5.454e-3071.60Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA6_ORYSJ9.303e-3071.60Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA9_ORYSJ1.215e-2970.37Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.215e-2970.37Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA3_ARATH2.707e-2967.90Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA7_ORYSJ7.876e-2965.43Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ORYSJ1.755e-2864.20Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI1.755e-2864.20Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC03001C04Rv OF1 Citrus clementina cDNA clone C03001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290880 ID=CX290880; Name=CX290880; organism=Citrus clementina; type=EST; length=251bp
GACCTCCATTCCTTTGATTGTTTACTGTACGCTACCTGCCTTCTGCCTTC
TCACTGGGAAATTCATTGTTCCTGAGATTAGCAACTATGCTAGTCTCGTC
TTTATTGGTCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGATGCA
GTGGGGTGGTGTTGGCATAGATGATTGGTGGAGAAACGAGCAGCTCTGGG
TGATTGGAGGTGCTTCCTCGCACTTTTTTTGCTCTCTTCCAGGGCCTACT
A
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