CX290880

Overview
NameCX290880
Unique NameCX290880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.473e-15
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LIVYC LPA  L +G+FIV  +     +  + + +++    +LE++W G+ + +WWRNEQ WVIGG S+H    L G
Sbjct:  964 TSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQG 1044          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.473e-15
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI LIVYC LPA  L +G+FIV  ++       + + +++    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  953 TSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQG 1033          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.473e-15
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI LIVYC LPA  L +G+FIV  ++       + + +++    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  953 TSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVLQG 1033          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.473e-15
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LIVYC LPA  L +G+FIV  ++       + + I++    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  908 TSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQG 988          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.473e-15
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ LIVYC LPA  L +G+FIV  ++       + + I++    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  908 TSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQG 988          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS  LIVYC LPA  L +G+FIV  ++    +  + + I++    +LE++W G+ +++WWRNEQ W+IGG S+H    + G
Sbjct:  928 TSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSAHLAAVIQG 1008          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+ L+ YC LPA  L +GKFIV  +S       + + +++    +LE++W G+ + +WWRNEQ WVIGG S+H    L G
Sbjct:  986 TSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQG 1066          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSI ++ YC LP   L +G F+V  ++    +  + + +S+    +LE++W G+ +++WWRNEQ W+IGG S+H    L G
Sbjct:  763 TSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSAHLVAVLQG 843          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    5 SIPLIVYCTLPAFCLLTGKFIVP-EISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASS 220
            S+PL VYC LPA CLLTGK   P ++S Y  ++ I L  S+AA+  LE++W  V +  WWR+E+LW++   S+
Sbjct:  630 SLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWWRDEKLWMVTATSA 702          
The following BLAST results are available for this feature:
BLAST of CX290880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CSLD5_ARATH6.473e-1541.98Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD2_ORYSJ6.473e-1541.98Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI6.473e-1541.98Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ6.473e-1541.98Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI6.473e-1541.98Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH1.104e-1440.74Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD4_ORYSJ1.442e-1441.98Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD6_ARATH1.883e-1437.04Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESAB_ORYSJ2.082e-1346.58Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionC03001C04Rv OF1 Citrus clementina cDNA clone C03001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290880 ID=CX290880; Name=CX290880; organism=Citrus clementina; type=EST; length=251bp
GACCTCCATTCCTTTGATTGTTTACTGTACGCTACCTGCCTTCTGCCTTC
TCACTGGGAAATTCATTGTTCCTGAGATTAGCAACTATGCTAGTCTCGTC
TTTATTGGTCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGATGCA
GTGGGGTGGTGTTGGCATAGATGATTGGTGGAGAAACGAGCAGCTCTGGG
TGATTGGAGGTGCTTCCTCGCACTTTTTTTGCTCTCTTCCAGGGCCTACT
A
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