CX291634

Overview
NameCX291634
Unique NameCX291634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+++QY+ NV LKIN K+GG N++L    S+ +PLVS  PTIIFG DV+H  PG             ++WP +++Y   V +Q+ + E+I  LFK    P       G+++ELL+ F +S+G  KP +II +R
Sbjct:  714 KMSKQYMANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGH-KPLRIIFYR 845          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLF----KPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT 401
            K  +QYL N+ LK+N K+GG N++L     K +P+++  PTI+FG DV+H SPG              +WP +++Y+  V +QS + E+I +L+     PL      G++RELL  FY+ +GQ KPS+II +R  ++
Sbjct:  731 KGGKQYLENLALKMNVKVGGRNTVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQ-KPSRIIFYRDGIS 866          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 3
Query:    9 NEQYLMNVLLKINAKLGGLNSLLAIEQSKN-LPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLF---KPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            N+QYL NV LKIN K+GG N++L     +N +P VS+VPTIIFG DV+H  PG              +WP +++YR  V +Q  + E+I+ LF   K      + G++RELL+ F K +G+ +P +II +R
Sbjct:  735 NKQYLENVALKINVKVGGRNTVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVASMDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKVVNGGMIRELLIAFRKKTGR-RPERIIFYR 864          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+N+QY+ NV LKIN K GG N++L     +N+PL++  PTII G DV+H  PG              +WP +++YR  V +Q+ + E+I  L+K    P      +G++RE  + F +++GQ  P +II +R
Sbjct:  675 KLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQI-PQRIIFYR 806          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO17_ORYSJ (Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+N+ YL +V LKINAK+GG N++L       LP V   PTI+FG  V+H  PG             ++WP +++Y   +  Q+   E I  LFK    P      +G+++E L+ FY+++ + KP +II +R
Sbjct:  552 KMNKWYLASVALKINAKMGGRNTVLVDALEMRLPHVRDTPTIVFGAHVTHPHPGKANSSSIAAVVASQDWPEVTKYAGLISVQACHQESIQGLFKVQDDPERGTTTSGMIKEHLMSFYRAT-KRKPGRIIFYR 683          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO18_ORYSJ (Protein argonaute 18 OS=Oryza sativa subsp. japonica GN=AGO18 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 3
Query:    9 NEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            N QY  NV LKINAK GG NS+  +    +LP+VSK PTIIFG DV+H                  +WP +++Y + VR Q+++ E+I  L           IVRELL + +K   + +P Q+I +R
Sbjct:  790 NVQYCANVALKINAKAGGRNSVF-LNVEASLPVVSKSPTIIFGADVTHPGSFDESTPSIASVVASADWPEVTKYNSVVRMQASRKEIIQDL---------DSIVRELL-NAFKRDSKMEPKQLIFYR 905          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   54 LGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDD----AGIVRELLVDFYKSSGQTKPSQIIIFR 389
            +GG N++L     + +PL++ +PT+IFG DV+H   G              +WP +S+Y+ SV SQS + E+I  LF  + +  +     G++REL+  F K++G  KP +II +R
Sbjct:  581 VGGRNTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSPSIAAVVASMDWPEVSKYKCSVSSQSHREEIIADLFTEVKDSQNRLVYGGMIRELIESFRKANGSYKPGRIIFYR 696          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3
Query:    6 VNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDA-----------------GIVRELLVDFYKSSGQTKPSQIIIFR 389
            ++ Q+L NV LKIN K GG NS+L   Q   +P   +  TIIFG DV+H + G              +WP +++Y+A V +Q  + E+I  LF       +A                 G+ RELL+ FY  + + KP +II +R
Sbjct:  716 LDRQFLENVSLKINVKAGGRNSVL---QRPLVPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQEIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFYR 857          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO4_HUMAN (Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMI-DSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K + Q L N+ LKINAKLGG+N++L   Q    P V + P I  G DV+H   G              +    SRY A+VR Q+++ E+  + L+     +D   +VRELL+ FYKS+ + KP++II +R
Sbjct:  546 KTSPQTLSNLCLKINAKLGGINNVLVPHQR---PSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGH-PSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKST-RFKPTRIIYYR 670          
The following BLAST results are available for this feature:
BLAST of CX291634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AGO1_ARATH7.622e-2039.85Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO12_ORYSJ1.698e-1937.96Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ8.427e-1941.22Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH7.134e-1836.84Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO17_ORYSJ6.677e-1635.34Protein argonaute 17 OS=Oryza sativa subsp. japoni... [more]
AGO18_ORYSJ3.664e-1438.58Protein argonaute 18 OS=Oryza sativa subsp. japoni... [more]
AGO11_ORYSJ1.066e-1334.48Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ1.179e-1233.10Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]
AGO4_HUMAN8.446e-1137.69Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC03011E07SK OF2 Citrus clementina cDNA clone C03011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291634 ID=CX291634; Name=CX291634; organism=Citrus clementina; type=EST; length=702bp
CTAAGGTCAATGAACAATATCTTATGAATGTCCTTTTGAAGATAAATGCC
AAACTTGGTGGTTTGAATTCTTTGTTGGCTATTGAGCAGTCAAAAAATCT
CCCTTTGGTCTCAAAGGTTCCTACGATAATTTTTGGGATGGATGTGTCAC
ATGGCTCCCCTGGACACTCTAACGTGCCATCCGTAGCTGCGGTTGTTAGC
TCTAGAAATTGGCCAATACTTTCCCGTTACAGAGCTTCTGTACGCAGCCA
GTCAACAAAGCTTGAGATGATAGATTCCTTGTTTAAGCCACTTCCAAACA
AGGATGATGCTGGCATAGTCAGAGAGCTTTTGGTGGACTTCTATAAGAGT
TCGGGACAAACAAAGCCATCCCAGATAATCATATTCAGGTCTACTTTAAC
TTGGAGATAATTTTTTTTTCTTTTTATATTTTATGCCATTATTGCATTTG
GTACTTTTTTGTTTTCTAATATTCAAGAACGGTGCTACCATTTATCTTGG
ATTGGTTCGAAGATTTGGAAGGCCGGAAGTGTAGGCCTAATGTGAACCAG
CCATGGCAAACCTGTATATTCCCTTTTTCTTTTGTGATTTTGACCTAGAG
CAGTTTCAAGAAATAGCATGACACTTGGGATTAAAGATTGTGGTATCTGG
TTTACTTGTACTGGAACCGGAAACATCCCTCTTTCATCAGGAATTTGGAT
GA
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