CX291653

Overview
NameCX291653
Unique NameCX291653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 71/223 (31.84%), Postives = 103/223 (46.19%), Query Frame = 2
Query:   35 IKAGVYRENVEVTKKHKNIMFIGDGRTRTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWE 673
            I  G+Y E V + +    I   G G  +TII  G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G +DFIFG A ++ + C +  R    P +     +TAQGR  P    G V +            V GS    LGR WK YSR +  +S  +D I P GW  W+
Sbjct:   73 ISNGIYSEKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDC---------TVMGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWK 280          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 66/243 (27.16%), Postives = 114/243 (46.91%), Query Frame = 2
Query:    2 PQGGTKRYILRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST----TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWEWYFALNTLFY 703
            P G TKR I+++  G Y+E V + +    I  +G      +IT      DG+     T  SA++ ++ + F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E +      T+FY
Sbjct:   87 PAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVIT-----YDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFY 313          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 68/238 (28.57%), Postives = 105/238 (44.12%), Query Frame = 2
Query:    2 PQGGTKRYILRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKH----QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWEWYFALNTLFY 703
            P     R I+++  G+Y E V V      +  +G     T +T +       T  +SAT+ V    FLA ++   NT+   K     QA+A+R+  D +AFYNC    +QDTL       FF NC I GT DFIFG  A++     +HA     G + ++ A  R    +  G      ++               YLGR W  + + V   + ++ +++P+GW E        T+FY
Sbjct:   88 PLANKNRVIIKLAPGIYHEKVTVDVGRPYVTLLGKPGAETNLTYAGTAAKYGTV-ESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA--VGDGLR-VIAAHNRQSTTEQNGYSFVHCKVTGVGT--------GIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFY 313          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 65/237 (27.43%), Postives = 110/237 (46.41%), Query Frame = 2
Query:    8 GGTKRYILRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWEWYFALNTLFY 703
            G T+R I++I  GVY+E V + +    I   G      ++T         T   SAT+ V+ + F+A +I  +N+A    G  K  QA+++R+  + +AFYNC    YQDT+   +   FF +C I GT DFIFG+  ++     ++          ++TA       + +G      ++  T            YLGR W  + + V   + ++ +++P+GW E        T+FY
Sbjct:   66 GNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQYGTV-DSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGI---RVITAHAGKSAAEKSGYSFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFY 290          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 76/223 (34.08%), Postives = 110/223 (49.33%), Query Frame = 2
Query:   11 GTKRYILRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV----VDGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW 595
            G+  +++ IK GVY E + +T+   N++  G+ R   +I  +        DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW
Sbjct:   55 GSTPFVILIKNGVYNERLTITRN--NLLLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPW 269          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 76/223 (34.08%), Postives = 109/223 (48.88%), Query Frame = 2
Query:   11 GTKRYILRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV----VDGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW 595
            G+  +++ IK GVY E + +T+   N+   G+ R   +I  +        DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW
Sbjct:   55 GSTPFVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPW 269          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 62/218 (28.44%), Postives = 95/218 (43.58%), Query Frame = 2
Query:   44 GVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG--PSKHQ----AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKN---MVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEW 670
            G+YRE V + K+   I   G G  +T+I       D   T  SAT     +  +   ITF+NT    P+  +    AVA R+  D     +   +  QDTL+    R ++  C+I+G +DFIFG   ++ + C ++         N    +TA  R  P+   G V              V G   T LGR W   +R +  +S ++D++ P GW  W
Sbjct:   70 GIYREKVTIPKEKGFIYLQGKGIEQTVIEYD----DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDC---------TVTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAW 274          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 65/229 (28.38%), Postives = 94/229 (41.05%), Query Frame = 2
Query:    8 GGTKRYILRIKAGVYRENVEVTKKH------------KNIMFIGDGRTRTIITGSR-NVVDGST------TFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKE 601
            GG  R  + +KAG Y E V V +               N + + +    T  +G++ N   G++      T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTLY+ +       R +F N  I G  DFIFG   AV   C I       G +         T P+   G +   S   AT +      +  T+LGR W +
Sbjct:  104 GGVARKYISVKAGTYNELVCVPESAPPITLYSLDANANNTVIVYNNANPTPASGAKTNPCMGTSSNATVGTVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYLGATNNTMVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGARATSYVFAPSTAPDNPHGFLAINSTFNATGN----ASNNSTHLGRAWDQ 328          
BLAST of CX291653 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 65/232 (28.02%), Postives = 91/232 (39.22%), Query Frame = 2
Query:    8 GGTKRYILRIKAGVYRE---------------------NVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK--NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKE 601
            GG  R  + +KAG+Y E                     N ++   + N       +T   +  S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTL+V +       R +F N  I G  DFIFG   AV   C I       G K  + + A   T P    G +   S   AT +      +   +LGR W +
Sbjct:  104 GGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVG--TLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGAKAASYIFAPS-TAPGNPYGFLAINSTFNATGN----PPNNSLHLGRAWDQ 328          
The following BLAST results are available for this feature:
BLAST of CX291653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME10_ARATH1.267e-2231.84Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PPME1_ARATH2.161e-2227.16Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME49_ARATH8.211e-2228.57Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME63_ARATH6.951e-2127.43Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH9.078e-2134.08Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD32.641e-2034.08Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME66_ARATH6.089e-1728.44Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PME2_RALSO3.458e-1228.38Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME1_RALSO4.516e-1228.02Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]

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Properties
Property NameValue
Genbank descriptionC03011G02SK OF2 Citrus clementina cDNA clone C03011G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291653 ID=CX291653; Name=CX291653; organism=Citrus clementina; type=EST; length=703bp
TCCTCAGGGAGGCACTAAGCGGTATATTCTTAGGATTAAAGCTGGTGTTT
ATCGGGAAAATGTTGAGGTGACAAAGAAGCATAAAAATATAATGTTCATC
GGTGACGGAAGGACTAGAACTATCATCACAGGAAGTAGAAATGTGGTTGA
TGGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGAT
TCTTGGCCCGAGACATTACATTCCAAAACACAGCAGGCCCCTCAAAGCAC
CAGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTG
CGATATGTTAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGT
TCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAAT
GCTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTC
CGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAA
ACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTA
AAACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGA
GTACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACC
CTGCCGGGTGGCACGAGTGGGAATGGTACTTCGCGTTGAACACATTGTTT
TAC
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