CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PORG3 (Tyrosyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tyrS PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.060e-37
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++  I       L   N+     Y G DPTA+SLH+G+L+G+++L  F R GH+ +ALIGGAT  +GDPS KS ER  LD  TL  N   I +  +          +   ++NNYDW KD+SFL F++ +G+   +  M+AK+SVKKRL  ES  GLSFTEFSYQLLQGYD+
Sbjct:    2 NFVEELRWRGMIHDIMPGTEEHL---NKGMTSAYVGIDPTADSLHIGHLVGVMMLRHFQRAGHRPIALIGGATGMIGDPSMKSAERVLLDEATLRHNQDCIKQQLAKFLDFDSDAPNAAKLVNNYDWMKDYSFLGFIRDIGKHITVNYMMAKDSVKKRLSAESSTGLSFTEFSYQLLQGYDY 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESOH (Tyrosyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.350e-36
Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +VVDIL  RG +E+ T +  LR LA+  E  +  Y GFDPTA SLH+G+L+ I+ L+   R GH+ +AL+GG T  VGDPSGK+  R  +  +T+E NI GI +  S    F     +++NN DW     ++ FL+ +GR   +  MI  ES + RLESE+GLSF EF+Y LLQ YDF
Sbjct:    2 SVVDILSERGFVEAFTHEQELRDLAA--ESAVTCYIGFDPTASSLHVGSLVPIMALAHMQRNGHRPIALVGGGTGLVGDPSGKTEMRQLITPETVEANIEGIQRQLSRFIDFDGGKALLVNNADWLTGLEYIPFLRDIGRHFSVNRMIKAESYRMRLESEEGLSFIEFNYMLLQAYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACF3 (Tyrosyl-tRNA synthetase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tyrS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.130e-36
Identity = 76/176 (43.18%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L+ RG L   T +  LR L  + EK + +YCG DP+ +SLH+G+L+  ++L  F   GH+ V LIGG T  +GDPSG+  ER       LE+N+  ++K    +FG+ N  I+NNYDW   F+ +DFL+  G+   + TM+ KE V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELKWRGALNQATDEEGLREL--TEEKKIALYCGTDPSGDSLHIGHLIPFMMLKRFQLAGHKPVILIGGGTGAIGDPSGRKTERDLETRSKLEQNVQSLTKQMIRLFGTENFTIVNNYDWLSKFTMIDFLRDYGKLFNLNTMLNKEVVASRLDA--GISFTEFTYQILQAIDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACBR (Tyrosyl-tRNA synthetase OS=Lactobacillus brevis GN=tyrS PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.751e-36
Identity = 76/177 (42.94%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  RG +   T ++ L+ L S  EK + +YCG DPT +S+H+G+L+  +++  F   GH    LIGGAT  +GDPSG+  ER    +D ++ N+  +S+    +F G SNV ++NNYDW    S LDFL+  G+   I TM+AK+ V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELTWRGAINQQTDAEGLKKLTS--EKKISLYCGVDPTGDSMHIGHLIPFMMMKRFELAGHHPYILIGGATGSIGDPSGRKTERQLQTMDKVQHNVKALSRQMQRLFGGDSNVTMVNNYDWLSKISLLDFLRDYGKLVNINTMLAKDIVASRLDT--GISFTEFTYQILQSVDF 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CYTH3 (Tyrosyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tyrS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.143e-35
Identity = 86/179 (48.04%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N V+ L+ RG+L  I       L   N+ T   Y GFDPTA SL +GNL+ I++L  F   GH  +AL+GGAT  +GDPSG+S ER  L  +TL  N  GI K  +       G+++  ++NNYDW+K   FL+FL+  G+   +  M+AK+SVKKRL  E GL+FTEFSYQLLQGYDF
Sbjct:    3 NFVEELKWRGMLHDIMPGTEEYLLK-NQTT--AYVGFDPTASSLTIGNLVTIMMLVHFQHAGHIPMALVGGATGMIGDPSGRSEERNFLSEETLRLNQEGIRKQLTKFLDFDCGANSAKLVNNYDWFKGIGFLEFLRDAGKHLTVNYMMAKDSVKKRL--EVGLTFTEFSYQLLQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BIFAA (Tyrosyl-tRNA synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tyrS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.325e-35
Identity = 84/181 (46.41%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP--SGKSIERPELDI----DTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +V+D LE RGL+   T D  R   + N + +  YCGFDPTA SLH+GNL+ +I +      GH  +AL+GGAT  +GDP  SG+    P+  +    D L+K I GI +T     GS+ V  ++NYDW    + +DFL+ VG+  R+GTM+AK++V +RL SE+G+SFTEFSYQ+LQG DF
Sbjct:   14 SVLDELEWRGLISQST-DRDRLAEALNGEPITYYCGFDPTAASLHIGNLVQLINMRHLQAAGHHPIALVGGATGLIGDPRQSGERTLNPKDVVAGWADRLKKQIGGILETE----GSNPVRFVSNYDWTASMNVIDFLRDVGKNFRMGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_DICDI (Probable tyrosyl-tRNA synthetase, mitochondrial OS=Dictyostelium discoideum GN=mtyrS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.325e-35
Identity = 77/199 (38.69%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  213 TQTHGRHPNVVDILERRGLLESITSDNLRSLA--------------SSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            T T     NV++IL++RG +  +T+ ++  +               ++N   + +Y GFDPTA+SLH+GNLL ++V+  F R GH  +AL+GGATA +GDPSGKS +R  L  + +E N+  I +  + + G   +V+ NN +W K    + FL++VG + R+G+MI K+ ++ RL   +E G+SFTEF Y L Q  DF
Sbjct:   30 TITKNDKNNVINILKKRGFIHQMTASDIEMIKMTSTNNNNNNDNNNNNNNNKVSLYAGFDPTADSLHIGNLLTLMVMLHFKRHGHNPIALMGGATALIGDPSGKSSDRVMLTEEFIEGNLKHIRENITAVLGEDTLVV-NNIEWNKTMDVISFLREVGSYFRVGSMIKKDFIQNRLSDSNENGISFTEFCYSLFQANDF 227          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PARD8 (Tyrosyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tyrS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.343e-35
Identity = 80/182 (43.96%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++  +       L    ++    Y G DPTA+SLH+G+L+ +++L  F R GH+ +AL+GGAT  +GDPS KS ER  LD  TL  N   I K  +          +   ++NNYDW K +SFL+F++ +G+   +  M+AK+SVKKRL  ES  G+SFTEFSYQLLQGYD+
Sbjct:    2 NFVEELRWRGMIADMMPGTEEQL---QKELTSAYVGIDPTADSLHIGHLVSVMMLKHFQRAGHRPIALVGGATGMIGDPSMKSAERNLLDEATLRHNQDCIKKQLAKFLDFDSDAPNAAKLVNNYDWMKGYSFLNFIRDIGKHITVNYMMAKDSVKKRLSRESSVGMSFTEFSYQLLQGYDY 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ROSS1 (Tyrosyl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.672e-35
Identity = 80/178 (44.94%), Postives = 110/178 (61.80%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L  RGLL   +SD L  L +    TL  Y GFDP+A+SLH+G+LL ++ L+ F R GH  +AL GG T  +GDPSGK+ ERP L  + +  N+  I    +       G  + ++LNN DW    S +DFL+ VG+   +  M+AK+SV+ R+ SE G+SFTEFSY LLQ YDF
Sbjct:    4 ILDELRWRGLLYE-SSDGLDELLTRERVTL--YIGFDPSADSLHIGHLLPLLTLARFQRWGHTPIALAGGGTGLIGDPSGKTQERPLLSKEQVAANVEAIKGQLAQFLDFNAGDHSALLLNNADWLTRLSLMDFLRDVGKHLTVNYMLAKDSVRSRMTSETGISFTEFSYMLLQAYDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AMOA5 (Tyrosyl-tRNA synthetase OS=Amoebophilus asiaticus (strain 5a2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.672e-35
Identity = 86/174 (49.43%), Postives = 110/174 (63.22%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVV-ILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG++  IT      L    ++ +  Y GFDPTA SLH+GNL  I++L  F   GH+ +A++GGAT  +GDPS KS ER  L  + L  N   I+   K F     S+N   +LNN DW+KDF FL FL++VG+   I  M+AKESVK+RL  E G+SFTEFSYQLLQGYDF
Sbjct:    8 LRWRGMIHDITPGLEAQL---QKEMITGYIGFDPTAPSLHVGNLATIMLLKHFQLAGHKPIAVVGGATGMIGDPSFKSTERKFLSEEELLHNQSCIMKQLKCFLDFSSSANTAELLNNIDWFKDFGFLRFLREVGKHISINYMMAKESVKRRL--EDGISFTEFSYQLLQGYDF 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_PORG36.060e-3746.70Tyrosyl-tRNA synthetase OS=Porphyromonas gingivali... [more]
SYY_DESOH1.350e-3646.07Tyrosyl-tRNA synthetase OS=Desulfococcus oleovoran... [more]
SYY_LACF35.130e-3643.18Tyrosyl-tRNA synthetase OS=Lactobacillus fermentum... [more]
SYY_LACBR8.751e-3642.94Tyrosyl-tRNA synthetase OS=Lactobacillus brevis GN... [more]
SYY_CYTH31.143e-3548.04Tyrosyl-tRNA synthetase OS=Cytophaga hutchinsonii ... [more]
SYY_BIFAA3.325e-3546.41Tyrosyl-tRNA synthetase OS=Bifidobacterium adolesc... [more]
SYYM_DICDI3.325e-3538.69Probable tyrosyl-tRNA synthetase, mitochondrial OS... [more]
SYY_PARD84.343e-3543.96Tyrosyl-tRNA synthetase OS=Parabacteroides distaso... [more]
SYY_ROSS15.672e-3544.94Tyrosyl-tRNA synthetase OS=Roseiflexus sp. (strain... [more]
SYY_AMOA55.672e-3549.43Tyrosyl-tRNA synthetase OS=Amoebophilus asiaticus ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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