CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRP2 (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 76/179 (42.46%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++   K+I G +S+      G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 HIFDELKERGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SODGM (Tyrosyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 77/182 (42.31%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRS--LASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +  LA+     + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I +  S       G ++ V  NNYDW+   + L FL  +G+   +  MI KE+VK+RL   + G+SFTEFSY LLQGYDF
Sbjct:    5 NLIQQLQERGLIAQVTDEKALAERLAAG---PIALYCGFDPTADSLHLGHLVPLLCLKRFQLAGHRPVALVGGATGLIGDPSFKATERKLNTAETVQEWVEKIKRQVSPFLDFDCGDNSAVAANNYDWFGSMNVLTFLLDIGKHFSVNQMINKEAVKQRLNRDDSGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SERP5 (Tyrosyl-tRNA synthetase OS=Serratia proteamaculans (strain 568) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 75/180 (41.67%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     +T+ + +  I K  S       GS++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   + G+SFTEFSY LLQG+DF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQLAGHKPVALVGGATGLIGDPSFKAAERKLNTTETVNEWVDKIRKQVSPFLDFDCGSNSAIAANNYDWFGGMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDSGISFTEFSYNLLQGFDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIMA (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup A GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+    ++I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCAP (Tyrosyl-tRNA synthetase OS=Mycoplasma agalactiae (strain PG2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 80/175 (45.71%), Postives = 113/175 (64.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++  LE R +L+ I+  N    A+ +  T  VY GFDPTAESLHLGN + I VL  F   G +  A++GGAT  +GDPS K  ER  LD +++ KN   I         S  + +++NYD++KD + L+FL+ VG+   +  M+AKESV+KR+  ++GLSFTEF+YQLLQG+DF
Sbjct:    2 NILKDLEERLILKDIS--NKDKFANLSPSTTGVYVGFDPTAESLHLGNYILISVLLRFKEYGFKTYAVLGGATGMIGDPSFKDSERVLLDNESVNKNKSKIKAQLE----SFGLEVIDNYDFYKDMNVLEFLRNVGKLVNVSYMMAKESVQKRI--QKGLSFTEFTYQLLQGFDF 168          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRS2 (Tyrosyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 74/179 (41.34%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++  +  I    S       G +   ++NNYDW+ D SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQGQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRA5 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 75/179 (41.90%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER---PELDIDTLEKNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ D L+ RGL+   T ++    A   E ++  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER    +  + +    I G +S       G +  V++NNYDW+ + SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKKTVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIG2 (Tyrosyl-tRNA synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISK---TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+   +  I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVGSIRSQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIG1 (Tyrosyl-tRNA synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISK---TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+   +  I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVGSIRSQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BUCAP (Tyrosyl-tRNA synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 81/181 (44.75%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISK--TFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLE-SEQGLSFTEFSYQLLQGYDF 761
            ++++ L +R L+  IT++N L+ L  +  K + +YCGFDPT +SLH+G+LL +I L  F   GH+ + LIGGAT+ +GDPS K+ ER       +EK  L IS+  +F   F S  ++ +ILNN  W+K  + L FL+ VG++  +  +I +E+VKKR++ S+QG+SFTEFSY LLQ YDF
Sbjct:    2 DLINELHQRNLIFHITNENKLKELIKN--KYISLYCGFDPTEDSLHVGHLLPLITLKRFQVLGHKPIVLIGGATSLIGDPSFKTKERLLKSDSFVEKCTLKISQQISFFLDFNSNFNSAIILNNNLWFKKINILQFLRDVGKYFSVNALINREAVKKRIKRSDQGISFTEFSYNLLQAYDF 180          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_STRP23.112e-3342.46Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_SODGM3.112e-3342.31Tyrosyl-tRNA synthetase OS=Sodalis glossinidius (s... [more]
SYY_SERP53.112e-3341.67Tyrosyl-tRNA synthetase OS=Serratia proteamaculans... [more]
SYY_NEIMA3.112e-3341.67Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_MYCAP3.112e-3345.71Tyrosyl-tRNA synthetase OS=Mycoplasma agalactiae (... [more]
SYY_STRS24.065e-3341.34Tyrosyl-tRNA synthetase OS=Streptococcus suis (str... [more]
SYY_STRA54.065e-3341.90Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_NEIG24.065e-3341.67Tyrosyl-tRNA synthetase OS=Neisseria gonorrhoeae (... [more]
SYY_NEIG14.065e-3341.67Tyrosyl-tRNA synthetase OS=Neisseria gonorrhoeae (... [more]
SYY_BUCAP4.065e-3344.75Tyrosyl-tRNA synthetase OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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