CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BIFLO (Tyrosyl-tRNA synthetase OS=Bifidobacterium longum GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 80/180 (44.44%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP--SGKSIERPELDI----DTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ LE RGL+   T D  R   + N + +  YCGFDPTA SLH+GNL+ +I +      GH  +AL+GGAT  +GDP  SG+    P+  +    D L+  I GI  T     G++ V  ++NYDW    + +DFL+ VG+  R+GTM+AK++V +RL SE+G+SFTEFSYQ+LQG DF
Sbjct:   15 LLEELEWRGLISQST-DRDRLAEALNGEPITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNPKDVVAGWADRLKNQIGGILDTE----GANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BIFLI (Tyrosyl-tRNA synthetase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 80/180 (44.44%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP--SGKSIERPELDI----DTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ LE RGL+   T D  R   + N + +  YCGFDPTA SLH+GNL+ +I +      GH  +AL+GGAT  +GDP  SG+    P+  +    D L+  I GI  T     G++ V  ++NYDW    + +DFL+ VG+  R+GTM+AK++V +RL SE+G+SFTEFSYQ+LQG DF
Sbjct:   15 LLEELEWRGLISQST-DRDRLAEALNGEPITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNPKDVVAGWADRLKNQIGGILDTE----GANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BIFLD (Tyrosyl-tRNA synthetase OS=Bifidobacterium longum (strain DJO10A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 80/180 (44.44%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP--SGKSIERPELDI----DTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ LE RGL+   T D  R   + N + +  YCGFDPTA SLH+GNL+ +I +      GH  +AL+GGAT  +GDP  SG+    P+  +    D L+  I GI  T     G++ V  ++NYDW    + +DFL+ VG+  R+GTM+AK++V +RL SE+G+SFTEFSYQ+LQG DF
Sbjct:   15 LLEELEWRGLISQST-DRDRLAEALNGEPITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNPKDVVAGWADRLKNQIGGILDTE----GANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_BACHK (Tyrosyl-tRNA synthetase 2 OS=Bacillus thuringiensis subsp. konkukian GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 72/179 (40.22%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR L    EK + +YCG DPT +S+H+G+L+  +++  F   GHQ V LIGGAT  +GDPSG+  ER    ++ ++ N+  ++     +F   G+S V ++NNYDW  + + ++FL+  G+   I +M+AK+ V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAVNQQTDEEGLRKLVE--EKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHQPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMVNNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDT--GISFTEFTYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRP7 (Tyrosyl-tRNA synthetase OS=Streptococcus pneumoniae (strain 70585) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.309e-33
Identity = 76/179 (42.46%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ D L+ RGL+   T +     A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     DT++   K+I G +S+      G +  V++NNYDW+   SF+DFL+ +G++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 HIFDELKDRGLIFQTTDEEALRKALE-EGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVKSIQGQLSRFLDFENGENKAVMVNNYDWFGSISFIDFLRDIGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRA1 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype Ia GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.309e-33
Identity = 76/179 (42.46%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ D L+ RGL+   T ++    A   E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER     +T+      I G +S       G +  V++NNYDW+ + SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGFVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKETVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ROSDO (Tyrosyl-tRNA synthetase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.309e-33
Identity = 68/146 (46.58%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  336 YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            Y GFD TA+SLH+G+L+ I++L WF + GH+ + L+GG T +VGDPS ++ ERP L  + ++ NI GI + FS     S+     ++LNN +W  + ++LDFL+ +GR   I  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   40 YIGFDATAKSLHVGSLIQIMMLRWFQKTGHKPLTLMGGGTTKVGDPSFRADERPLLGPEAIDDNIAGIKQVFSAYIDYSDAPTGALMLNNAEWLDNLNYLDFLRDIGRHFSINRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLAB (Tyrosyl-tRNA synthetase OS=Chlamydophila abortus GN=tyrS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.309e-33
Identity = 77/172 (44.77%), Postives = 111/172 (64.53%), Query Frame = 3
Query:  252 LERRGLLESITS--DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RG+LE+ +S  DN+ +  S+       Y GFDPTA SLH+G+ +GI  L      G   VAL+G AT  +GDPSGKSIER  L+   +  N   +S+  +  +    V I+NN DW K+ + +DFL+ VG+  R+G M+ K++VK+R++SE+G+S+TEFSY LLQ YDF
Sbjct:    8 LQDRGILENFSSGLDNVSTPVSA-------YLGFDPTAPSLHIGHWIGICFLRRMAHFGLTPVALVGSATGMIGDPSGKSIERTLLEESQVAYNSQKLSECLA--YYLPGVQIVNNIDWLKETTVIDFLRDVGKHFRLGVMLGKDTVKQRVQSEEGISYTEFSYMLLQSYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRGC (Tyrosyl-tRNA synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.934e-33
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ D L+ RGL+   T+D         E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E  +  I    + +     G +   ++NNYDW+ D SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 HIFDELKERGLIFQ-TTDEEALRQELEEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVKSIQGQLAGLLDFENGQNKAEMVNNYDWFSDISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_OPITP (Tyrosyl-tRNA synthetase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.934e-33
Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASS-NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG----SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L+ RGL    T  +L +L     +  + +YCGFDPTA+SLH+GNL+ ++ L  F   GH  +AL GGAT  VGDPSG+S ER  L  D +  NI  I +           ++   +++N  W    SFL+FL+ VG+   +  M+AKESV+ RLESE G+S+TEFSY LLQ +DF
Sbjct:    3 ILDDLQWRGLYADCT--DLAALTQRLGQGPVTLYCGFDPTADSLHVGNLVPLLALRRFQLHGHHPIALAGGATGMVGDPSGRSAERNLLTPDQVAHNIASIKQQLGRFLDFDATTNPARMVDNSTWTAPISFLEFLRDVGKHFSVNAMLAKESVRARLESESGISYTEFSYMLLQAHDF 179          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_BIFLO4.065e-3344.44Tyrosyl-tRNA synthetase OS=Bifidobacterium longum ... [more]
SYY_BIFLI4.065e-3344.44Tyrosyl-tRNA synthetase OS=Bifidobacterium longum ... [more]
SYY_BIFLD4.065e-3344.44Tyrosyl-tRNA synthetase OS=Bifidobacterium longum ... [more]
SYY2_BACHK4.065e-3340.22Tyrosyl-tRNA synthetase 2 OS=Bacillus thuringiensi... [more]
SYY_STRP75.309e-3342.46Tyrosyl-tRNA synthetase OS=Streptococcus pneumonia... [more]
SYY_STRA15.309e-3342.46Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_ROSDO5.309e-3346.58Tyrosyl-tRNA synthetase OS=Roseobacter denitrifica... [more]
SYY_CHLAB5.309e-3344.77Tyrosyl-tRNA synthetase OS=Chlamydophila abortus G... [more]
SYY_STRGC6.934e-3341.34Tyrosyl-tRNA synthetase OS=Streptococcus gordonii ... [more]
SYY_OPITP6.934e-3343.58Tyrosyl-tRNA synthetase OS=Opitutus terrae (strain... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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