CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DINSH (Tyrosyl-tRNA synthetase OS=Dinoroseobacter shibae (strain DFL 12) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.934e-33
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  RG L   T       A S +  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  + ++ NI G+ + FS+      G ++ ++LNN +W    ++L+FL+ VGR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 VMMERGFLADCTDYQGLDEAMS-KGVVPTYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSDERPLLGAEQIDANIAGMKQVFSSYLTYGDGPTDALMLNNAEWLDGLNYLEFLRDVGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_YERE8 (Tyrosyl-tRNA synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.056e-33
Identity = 74/180 (41.11%), Postives = 112/180 (62.22%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     DT+ + +  I +  S       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   + G+SFTEFSY LLQ YDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPISLYCGFDPTADSLHLGHLVPLLCLKRFQLAGHRPVALVGGATGMIGDPSFKASERKLNTEDTVNEWVEKIRRQVSPFLDFDCGDNSAIAANNYDWFGGMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDSGISFTEFSYNLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HAMD5 (Tyrosyl-tRNA synthetase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.056e-33
Identity = 74/180 (41.11%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N+++ LE+RGL+  +T D  R      +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ + L+GGAT  +GDPS K+ ER   DIDT+ + +  I +          G+ +  I NN++W+   + L FL+ +G+   +  M+ KE+VK+RL  ++ G+SFTEFSY LLQ YDF
Sbjct:    5 NLIEQLEQRGLIAQVT-DKTRLSERLYQGQISLYCGFDPTADSLHLGHLVPLLCLKRFQLVGHKPIILVGGATGLIGDPSFKAGERKLNDIDTVHQWVNKIREQVEPFLDFDCGNHSATIENNHNWFSHINVLTFLRDIGKHFSVNQMMNKEAVKQRLSRTDSGISFTEFSYNLLQSYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SILST (Tyrosyl-tRNA synthetase OS=Silicibacter sp. (strain TM1040) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32
Identity = 75/184 (40.76%), Postives = 111/184 (60.33%), Query Frame = 3
Query:  231 HP--NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            HP  + + I+  RG L   T    L     S  +T   Y G+D TA+SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  + ++ NI G+ K F+     S+     ++LNN +W    ++L+FL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    4 HPKSDFIAIMMERGFLADCTDYQGLDEALVSGTQT--AYIGYDATAQSLHVGHLLNIMMLRWLQKTGHRPITLMGGGTTKVGDPSFRSDERPLLGPEQIDANIAGMQKVFAKYLDYSDAKNGAMMLNNAEWLDGLNYLEFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PEDPA (Tyrosyl-tRNA synthetase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tyrS PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32
Identity = 73/176 (41.48%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  RG +   T +  L+ L  ++EK + +Y G DPT +S+H+G+L+  +VL  F + GH+ V LIGG T  +GDPSGK  ER    ++ +  N   +       FG+ N  ++NNYDW    S LDFL+  G+   + TM+AK+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELTWRGAVNQQTDEEGLKKL--TDEKKIGLYAGIDPTGDSMHIGHLIPFMVLKRFQQAGHKPVILIGGGTGSIGDPSGKKSERVLQTMEQVHHNEEALKSQMVKFFGTDNFRMVNNYDWLSKMSLLDFLRDYGKLFNVNTMLAKDIVASRL--EVGISFTEFTYQILQSIDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_BACC1 (Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (strain ATCC 10987) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32
Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR L    EK + +YCG DPT +S+H+G+L+  +++  F   GH  V LIGGAT  +GDPSG+  ER    ++ ++ N+  ++     +F   G+S V ++NNYDW  + + ++FL+  G+   I +M+AK+ V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAINQQTDEEGLRKLVE--EKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMVNNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDT--GISFTEFTYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_WOLPP (Tyrosyl-tRNA synthetase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32
Identity = 69/177 (38.98%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI----FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ ++ RG L   T+ +      S +  +  Y GFD TA SLH+G+L+ I++L    + G++ + L+GG T ++GDPSGK   R  L I+ + +NILGI KT   +    +G +  +I+NN DW  +  ++DFL+ +G    +  M+  +SVK RL+ EQ LSF EF+Y LLQ YDF
Sbjct:    8 LNFIQERGYLYQCTNIDRLDQLLSQDNYIIAYIGFDCTAPSLHIGSLIQIMMLRHLQKFGYKPIVLLGGGTTKIGDPSGKDKARSVLPIEDINQNILGIKKTLEKMISFDYGKTGAIIVNNADWLDNIKYIDFLRDIGTHFSVNRMLGFDSVKIRLDREQNLSFLEFNYMLLQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_UREU1 (Tyrosyl-tRNA synthetase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32
Identity = 77/175 (44.00%), Postives = 109/175 (62.29%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ R L+ +IT++     A +  K   +Y GFDP+A+SLHLGN + I++L  F     +  AL+GGAT  +GDPSGKS ER  LD   LE NI  I          +N  ++NNYD++K+ +FLDFL+ VG+   I  ++ KE +  RL  + G+S+TEFSY LLQGYDF
Sbjct:    3 NLIKDLKARNLINNITNEEKLKKALAENKG--IYVGFDPSADSLHLGNYIMIMLLKRFRLHNIKTFALVGGATGMIGDPSGKSAERNLLDKTILEHNITKIKYQLEKF---TNSQVINNYDFYKNMTFLDFLRDVGKLININYLLEKEIISSRL--DVGISYTEFSYNLLQGYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLCV (Tyrosyl-tRNA synthetase OS=Chlamydophila caviae GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32
Identity = 74/170 (43.53%), Postives = 107/170 (62.94%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RG+LE  +         S E  +  Y GFDPTA SLH+G+ +GI  L      G   VAL+G AT  +GDPSGKSIER  L+ + +  N   +S+  S       V I+NN +W++  + +DFL+ VG+  R+GTM+ K+++K+R++SE+G+S+TEFSY LLQ YDF
Sbjct:    8 LKDRGILEDFSHG-----LDSVESPISAYLGFDPTAASLHIGHWIGICFLRRMASFGITPVALVGSATGMIGDPSGKSIERTLLESNEVAHNSKKLSECLSHYL--PGVQIVNNMEWFQGTTVIDFLRDVGKHFRLGTMLGKDTIKQRIQSEEGISYTEFSYILLQSYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_BACCZ (Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (strain ZK / E33L) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32
Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR L    EK + +YCG DPT +S+H+G+L+  +++  F   GH  V LIGGAT  +GDPSG+  ER    ++ ++ N+  ++     +F   G+S V ++NNYDW  + + ++FL+  G+   I +M+AK+ V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAVNQQTDEEGLRKLVE--EKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMVNNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDT--GISFTEFTYQILQAMDF 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_DINSH6.934e-3341.14Tyrosyl-tRNA synthetase OS=Dinoroseobacter shibae ... [more]
SYY_YERE89.056e-3341.11Tyrosyl-tRNA synthetase OS=Yersinia enterocolitica... [more]
SYY_HAMD59.056e-3341.11Tyrosyl-tRNA synthetase OS=Hamiltonella defensa su... [more]
SYY_SILST1.183e-3240.76Tyrosyl-tRNA synthetase OS=Silicibacter sp. (strai... [more]
SYY_PEDPA1.183e-3241.48Tyrosyl-tRNA synthetase OS=Pediococcus pentosaceus... [more]
SYY2_BACC11.183e-3239.66Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (stra... [more]
SYY_WOLPP1.545e-3238.98Tyrosyl-tRNA synthetase OS=Wolbachia pipientis sub... [more]
SYY_UREU11.545e-3244.00Tyrosyl-tRNA synthetase OS=Ureaplasma urealyticum ... [more]
SYY_CHLCV1.545e-3243.53Tyrosyl-tRNA synthetase OS=Chlamydophila caviae GN... [more]
SYY2_BACCZ1.545e-3239.66Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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