CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_YERP3 (Tyrosyl-tRNA synthetase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     DT+ + +  I    S       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   + G+SFTEFSY LLQ YDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPISLYCGFDPTADSLHLGHLVPLLCLKRFQLAGHRPVALVGGATGMIGDPSFKASERKLNTEDTVNEWVEKIRHQVSPFLDFDCGENSAIAANNYDWFGGMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDSGISFTEFSYNLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIM0 (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 74/180 (41.11%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ R L+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+    ++I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRDLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_GEOKA (Tyrosyl-tRNA synthetase OS=Geobacillus kaustophilus GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 81/177 (45.76%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  252 LERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE------KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T  D LR L   NE+ + +YCGFDPTA+SLH+GNL  I+ L  F + GH+ +AL+GGAT  +GDPSGK  ER     +T+E      K  LG    F      +   I NNYDW      + FL+ VG+   +  M+AKESV+ R+E+  G+SFTEFSY +LQ YDF
Sbjct:    7 LQWRGLVNQTTDEDGLRKLL--NEERVTLYCGFDPTADSLHIGNLAAILTLRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEA--DGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIET--GISFTEFSYMMLQAYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESHY (Tyrosyl-tRNA synthetase OS=Desulfitobacterium hafniense (strain Y51) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 72/179 (40.22%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L+ RGL+   T +   +L    E  + +YCGFDPTA+SLH+G+LL +++L  F   GH  +AL+GG T  +GDPSGK+ ER     + +++    I +  S       V    ++ NNY+W    + ++FL+ +G+   +G+M+AKESV+ R+   +G+SFTEFSYQ+LQ YDF
Sbjct:    2 NILDDLKARGLVYQTTDEE--ALYKRLESPMTLYCGFDPTADSLHIGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKEQLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRM--SRGISFTEFSYQILQSYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESHD (Tyrosyl-tRNA synthetase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 72/179 (40.22%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L+ RGL+   T +   +L    E  + +YCGFDPTA+SLH+G+LL +++L  F   GH  +AL+GG T  +GDPSGK+ ER     + +++    I +  S       V    ++ NNY+W    + ++FL+ +G+   +G+M+AKESV+ R+   +G+SFTEFSYQ+LQ YDF
Sbjct:    2 NILDDLKARGLVYQTTDEE--ALYKRLESPMTLYCGFDPTADSLHIGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKEQLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRM--SRGISFTEFSYQILQSYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BLOFL (Tyrosyl-tRNA synthetase OS=Blochmannia floridanus GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 73/181 (40.33%), Postives = 109/181 (60.22%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQ-GLSFTEFSYQLLQGYDF 761
            N++D L  RG +  IT D  +  A  N + + +YCGFDPTA+SLH+G+L  ++ L  F + GH+ + L+GGAT  +GDPS K  ER     +T +K I  I    +         +S   I++NY W+   + L FL+ +G+F  I  MI K+ +KKRL+++  G+S+TEFSY L+Q YDF
Sbjct:    4 NIIDYLYERGSIAQIT-DRKKLNAVLNSQPITLYCGFDPTADSLHIGHLAPLLCLKRFQKAGHRPLILLGGATGLIGDPSFKDSERKLQSFNTTQKWIKKIKLQIALFIDCNSNNASQAHIIDNYSWFSSMNILTFLRDIGKFFSINKMINKDIIKKRLKNDNYGISYTEFSYNLMQSYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACCA (Tyrosyl-tRNA synthetase OS=Bacillus caldotenax GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 81/177 (45.76%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  252 LERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE------KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T  D LR L   NE+ + +YCGFDPTA+SLH+GNL  I+ L  F + GH+ +AL+GGAT  +GDPSGK  ER     +T+E      K  LG    F      +   I NNYDW      + FL+ VG+   +  M+AKESV+ R+E+  G+SFTEFSY +LQ YDF
Sbjct:    7 LQWRGLVNQTTDEDGLRKLL--NEERVTLYCGFDPTADSLHIGNLAAILTLRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEA--DGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIET--GISFTEFSYMMLQAYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SILPO (Tyrosyl-tRNA synthetase OS=Silicibacter pomeroyi GN=tyrS PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.635e-32
Identity = 68/147 (46.26%), Postives = 98/147 (66.67%), Query Frame = 3
Query:  336 YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSN-VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            Y GFD TA+SLH+G+L+ I++L W  + GH+ + L+GG T +VGDPS ++ ERP L    ++ NI GI K F+       G+ N  ++LNN +W  D ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   40 YIGFDATAKSLHVGSLIQIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRADERPLLTPAQIDDNIAGIRKVFAAYIDYDSGAENAALMLNNEEWLDDLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 186          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_VIBPA (Tyrosyl-tRNA synthetase 1 OS=Vibrio parahaemolyticus GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.635e-32
Identity = 76/174 (43.68%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG---SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLE-SEQGLSFTEFSYQLLQGYDF 761
            L+ RGL+    + +L  + +   +   VYCGFDPTA SLH+G+L+ +I+L  F   GHQAVALIGGAT  +GDPS K+ ER     + +   +  +S     +     S  ++++NN DW +  + +DF + VG+   I TMI +ESVK+RL+  +QG+SFTEFSY LLQ YDF
Sbjct:    9 LQDRGLIAQ--ASDLEEIQTLLSQPQTVYCGFDPTAGSLHIGHLVPLIMLKRFQDAGHQAVALIGGATGMIGDPSFKATERSLNSAEIVSGWVNDLSNQIQQLMNHQLSKPMIMVNNADWMRAINVIDFFRDVGKHFSINTMINRESVKQRLQRPDQGISFTEFSYALLQSYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACSS (Tyrosyl-tRNA synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 71/177 (40.11%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG-SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  R  +   T +D LR L  + +K++ +YCG DPT +S+H+G+L+  +++  F   GH    +IGG T  +GDPSG+  ER    ++ ++ N+  +S     +FG  +NV ++NNYDW    S LDFL+  G+   I TM+AK+ V  RL  + G+SFTEF+YQ+LQ  DF
Sbjct:    4 NIIDELTWRDAINQQTDADGLREL--TEKKSISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHHPYIVIGGGTGSIGDPSGRKSERQLQTMEMVQHNVEALSGQMKRLFGEDANVSMVNNYDWLSKISLLDFLRDYGKLFNINTMLAKDVVASRL--DVGISFTEFTYQILQSVDF 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_YERP32.017e-3241.11Tyrosyl-tRNA synthetase OS=Yersinia pseudotubercul... [more]
SYY_NEIM02.017e-3241.11Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_GEOKA2.017e-3245.76Tyrosyl-tRNA synthetase OS=Geobacillus kaustophilu... [more]
SYY_DESHY2.017e-3240.22Tyrosyl-tRNA synthetase OS=Desulfitobacterium hafn... [more]
SYY_DESHD2.017e-3240.22Tyrosyl-tRNA synthetase OS=Desulfitobacterium hafn... [more]
SYY_BLOFL2.017e-3240.33Tyrosyl-tRNA synthetase OS=Blochmannia floridanus ... [more]
SYY_BACCA2.017e-3245.76Tyrosyl-tRNA synthetase OS=Bacillus caldotenax GN=... [more]
SYY_SILPO2.635e-3246.26Tyrosyl-tRNA synthetase OS=Silicibacter pomeroyi G... [more]
SYY1_VIBPA2.635e-3243.68Tyrosyl-tRNA synthetase 1 OS=Vibrio parahaemolytic... [more]
SYY_LACSS3.441e-3240.11Tyrosyl-tRNA synthetase OS=Lactobacillus sakei sub... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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