CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACS1 (Tyrosyl-tRNA synthetase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 71/176 (40.34%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  RG +  ++ +  LR L   ++K++ +YCG DPT +SLH+G+L+  ++L  F   GH+A  +IGG T  +GDPSGK  ER    ++ +  N   ++K    +FG  N+ I+NN DW      L FL+  G+   + TM+ KE V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NILDELAWRGAINQVSDEEGLRKLL--DKKSVGLYCGVDPTGDSLHIGHLIPFMMLKRFQEAGHRAHIIIGGGTGSIGDPSGKKSERVLQTMEQVHHNEEALTKQMKHLFGKDNITIVNNRDWLSKIDLLGFLRDYGKLFNVNTMLNKEVVASRL--EVGISFTEFTYQILQSIDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOTE (Tyrosyl-tRNA synthetase OS=Clostridium tetani GN=tyrS PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 68/178 (38.20%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV D+L+ RG ++  T  + +R L + ++ T   Y GFDPTA+SLH+G+ L +++++   + GH+ +AL+GG T R+GDPSGKS  R  L  + ++KN+  I    S    F     ++++N DW  + ++L+F++++G    +  M+  E  K+RL  E+GLSF EF+Y L+Q YDF
Sbjct:    4 NVFDVLKERGYIKQTTHEEEIRDLINKDKITF--YIGFDPTADSLHIGHFLPLMMMAHMQKAGHRPIALVGGGTVRIGDPSGKSEMRKMLSKEAIDKNVSSIKSQISRFIDFSDDKAILVDNADWLLNLNYLEFIREIGVHFSVNKMLTAECFKQRL--EKGLSFLEFNYMLMQAYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_STRT2 (Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tyrS1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 75/178 (42.13%), Postives = 114/178 (64.04%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E   + I G +S+      G +  V++NNYDW+   SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVNNYDWFGSVSFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_STRT1 (Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tyrS1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 75/178 (42.13%), Postives = 114/178 (64.04%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E   + I G +S+      G +  V++NNYDW+   SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVNNYDWFGSVSFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_ENTFA (Tyrosyl-tRNA synthetase 1 OS=Enterococcus faecalis GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG-SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  R  +   T++  LR L  +   ++ +YCG DPT +S+H+G+L+  +++  F   GH    LIGG T  +GDPSG++ ER    ++ ++ N+  +S     +FG  + V ++NNYDW  + S LDFL+  G+   + TM+AK+ V  RLES  G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELAWRDAINQQTNEEGLRELTENT--SISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNNYDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLES--GISFTEFTYQILQSIDF 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNAS (Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophicus (strain SB) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 73/177 (41.24%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV D+   RG +E +T +N  ++  + E  L  Y GFDPTA SLH+G+L+ I+ L    R GH ++AL+GG TA +GDPSGK+  R  L  + +E N   + + F+    F     +++NN DW    +++ FL+ +GR   +  M+A ES K RL  E+GL+F EF+Y LLQ YDF
Sbjct:    5 NVYDVFMERGFIEQVTDEN--AVRKALEAPLACYIGFDPTARSLHIGSLVPIMALIHLQRHGHTSIALVGGGTALIGDPSGKTEMRQILTREKIELNATCMRRQFARYLSFEDKKAMMINNADWLTKLNYISFLRDIGRHFSVNKMLAAESYKMRL--EKGLNFIEFNYMLLQAYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBB (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV+D L  RG ++  T +        NEK +  Y GFDPTA+SLH+G+ + ++ ++   R GH+ +AL+GG TA VGDPSGK+  R  L  + ++ N+  I K       F     +I+NN DW  D +++DFL++VG    +  M++ E  K+RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVLDELLDRGYIKQFTHEEETRKLLENEK-VTFYIGFDPTADSLHVGHFIAMMFMAHMQRAGHRPIALLGGGTAMVGDPSGKTDMRKMLTKEQIQHNVDSIKKQMERFIDFSDDKALIVNNADWLLDLNYVDFLREVGVHFSVNRMLSAECFKQRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBA (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV+D L  RG ++  T +        NEK +  Y GFDPTA+SLH+G+ + ++ ++   R GH+ +AL+GG TA VGDPSGK+  R  L  + ++ N+  I K       F     +I+NN DW  D +++DFL++VG    +  M++ E  K+RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVLDELLDRGYIKQFTHEEETRKLLENEK-VTFYIGFDPTADSLHVGHFIAMMFMAHMQRAGHRPIALLGGGTAMVGDPSGKTDMRKMLTKEQIQHNVDSIKKQMERFIDFSDDKALIVNNADWLLDLNYVDFLREVGVHFSVNRMLSAECFKQRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BRUSU (Tyrosyl-tRNA synthetase OS=Brucella suis GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG +  I+ ++ L  L +  ++T+  Y GFDPTA SLH G L+ I++L W  + GH+ VAL+GG T  VGDPS K   R  +  DT+ +N+  I + F+       G+++ +++NN +W ++ ++L+FL+ VGR   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 LSERGFIHQISDESGLDELLA--KETVTAYIGFDPTAPSLHAGGLIQIMMLYWLQQTGHKPVALMGGGTGMVGDPSFKDEARKLMTEDTIAENMASIKRVFANYLTFGDGANDALMVNNGEWLRNINYLEFLRDVGRHFSVNRMLSFDSVKLRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BRUME (Tyrosyl-tRNA synthetase OS=Brucella melitensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG +  I+ ++ L  L +  ++T+  Y GFDPTA SLH G L+ I++L W  + GH+ VAL+GG T  VGDPS K   R  +  DT+ +N+  I + F+       G+++ +++NN +W ++ ++L+FL+ VGR   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 LSERGFIHQISDESGLDELLA--KETVTAYIGFDPTAPSLHAGGLIQIMMLYWLQQTGHKPVALMGGGTGMVGDPSFKDEARKLMTEDTIAENMASIKRVFANYLTFGDGANDALMVNNGEWLRNINYLEFLRDVGRHFSVNRMLSFDSVKLRLDREQSLSFLEFNYMILQAYDF 184          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_LACS13.441e-3240.34Tyrosyl-tRNA synthetase OS=Lactobacillus salivariu... [more]
SYY_CLOTE3.441e-3238.20Tyrosyl-tRNA synthetase OS=Clostridium tetani GN=t... [more]
SYY1_STRT23.441e-3242.13Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermop... [more]
SYY1_STRT13.441e-3242.13Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermop... [more]
SYY1_ENTFA3.441e-3239.55Tyrosyl-tRNA synthetase 1 OS=Enterococcus faecalis... [more]
SYY_SYNAS4.494e-3241.24Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophic... [more]
SYY_CLOBB4.494e-3241.24Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_CLOBA4.494e-3241.24Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_BRUSU4.494e-3240.57Tyrosyl-tRNA synthetase OS=Brucella suis GN=tyrS P... [more]
SYY_BRUME4.494e-3240.57Tyrosyl-tRNA synthetase OS=Brucella melitensis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
back to top