CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BRUAB (Tyrosyl-tRNA synthetase OS=Brucella abortus GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG +  I+ ++ L  L +  ++T+  Y GFDPTA SLH G L+ I++L W  + GH+ VAL+GG T  VGDPS K   R  +  DT+ +N+  I + F+       G+++ +++NN +W ++ ++L+FL+ VGR   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 LSERGFIHQISDESGLDELLA--KETVTAYIGFDPTAPSLHAGGLIQIMMLYWLQQTGHKPVALMGGGTGMVGDPSFKDEARKLMTEDTIAENMASIKRVFANYLTFGDGANDALMVNNGEWLRNINYLEFLRDVGRHFSVNRMLSFDSVKLRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BRUA2 (Tyrosyl-tRNA synthetase OS=Brucella abortus (strain 2308) GN=tyrS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.494e-32
Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG +  I+ ++ L  L +  ++T+  Y GFDPTA SLH G L+ I++L W  + GH+ VAL+GG T  VGDPS K   R  +  DT+ +N+  I + F+       G+++ +++NN +W ++ ++L+FL+ VGR   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 LSERGFIHQISDESGLDELLA--KETVTAYIGFDPTAPSLHAGGLIQIMMLYWLQQTGHKPVALMGGGTGMVGDPSFKDEARKLMTEDTIAENMASIKRVFANYLTFGDGANDALMVNNGEWLRNINYLEFLRDVGRHFSVNRMLSFDSVKLRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_UREPA (Tyrosyl-tRNA synthetase OS=Ureaplasma parvum GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++  L+ R L+ +IT++    L  + EK   +Y GFDP+A+SLHLGN + I++L  F     + +AL+GGAT  +GDPSGKS ER  LD   LEKNI  I          +N  ++NNY ++++ +FLDFL+ VG+   I  ++ KE +  RL    G+S+TEFSY LLQGYDF
Sbjct:    3 SLIKDLKARNLINNITNEE--KLIKALEKNKGIYVGFDPSADSLHLGNYIMIMLLKRFRLYNIKTLALVGGATGMIGDPSGKSAERNLLDKTILEKNIAKIKFQLEKF---TNSQVINNYVFYENMTFLDFLRDVGKLININYLLEKEIINSRL--SVGISYTEFSYNLLQGYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_UREP2 (Tyrosyl-tRNA synthetase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++  L+ R L+ +IT++    L  + EK   +Y GFDP+A+SLHLGN + I++L  F     + +AL+GGAT  +GDPSGKS ER  LD   LEKNI  I          +N  ++NNY ++++ +FLDFL+ VG+   I  ++ KE +  RL    G+S+TEFSY LLQGYDF
Sbjct:    3 SLIKDLKARNLINNITNEE--KLIKALEKNKGIYVGFDPSADSLHLGNYIMIMLLKRFRLYNIKTLALVGGATGMIGDPSGKSAERNLLDKTILEKNIAKIKFQLEKF---TNSQVINNYVFYENMTFLDFLRDVGKLININYLLEKEIINSRL--SVGISYTEFSYNLLQGYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHIFL (Tyrosyl-tRNA synthetase OS=Shigella flexneri GN=tyrS PE=3 SV=6)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E +G+S TEFSY L QGYD+
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDEGMSITEFSYNLQQGYDW 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHIF8 (Tyrosyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E +G+S TEFSY L QGYD+
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDEGMSITEFSYNLQQGYDW 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHIBS (Tyrosyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=tyrS PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E +G+S TEFSY L QGYD+
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDEGMSITEFSYNLQQGYDW 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCMO (Tyrosyl-tRNA synthetase OS=Mycoplasma mobile GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 76/170 (44.71%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ + L++ I+  N+  + +S +  + +Y GFDP+A+S+HLGN + I VL    +     VALIGGAT  +GDPSGK  ER  +D DTL+KN   I K        + +V  NN D++K+ SF+DFL+ VG+F ++  M++KE VK RLES  G+SFTEF+Y L+Q  DF
Sbjct:    8 LQEKNLIQDIS--NIEKIENSLKNKMGIYVGFDPSAKSIHLGNFVVINVLLIAKKHRIPTVALIGGATGGIGDPSGKKSERILIDEDTLKKNTEAIKKQIKHFLPDAKIV--NNSDFYKNQSFIDFLRDVGKFIQVSYMLSKEIVKNRLES--GISFTEFAYSLIQANDF 171          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACPL (Tyrosyl-tRNA synthetase OS=Lactobacillus plantarum GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSD-NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG-SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L+ RG +   T +  L+ L  +  +++ +YCG DPT +S+H+G+L+  ++L  F   GH    ++GG T  +GDPSGK+ ER    +D ++ N  G+S     +FG   N  I+NNYDW    S LDFL+  G+   + TM+ KE V  RL  E G+S+TEF+YQ+LQ  DF
Sbjct:    2 NIIDDLKWRGAINQQTDEAGLKELTEN--QSVSLYCGIDPTGDSMHIGHLIPFMILKRFQLAGHHPYVVVGGGTGAIGDPSGKNSERKLQTMDQVKHNQDGLSAQMYKLFGHDENFSIVNNYDWLSKISLLDFLRDYGKLFSVNTMLNKEVVASRL--EVGISYTEFTYQILQSVDF 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BARQU (Tyrosyl-tRNA synthetase OS=Bartonella quintana GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST--IFG--SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            I+  RG +  I SD     A  +++ +  Y GFDPTA SLH G+LL I++L W  + GH+ +AL+GG T  +GDPS K   RP L  D +  NI+ I K F+    FG   ++  I+NN +W    ++L+FL+ VG+   I  M++ +SV+ RLE E  LSF EF+Y +LQ YDF
Sbjct:   11 IMSERGFIHQI-SDEKGLDALFSKEVVSAYIGFDPTASSLHAGSLLQIMMLHWLQKTGHRPIALMGGGTGLIGDPSFKDEARPLLTQDDIATNIVSIKKVFANYLTFGEKETDACIINNAEWLCKLNYLEFLRDVGKHFSINRMLSFDSVRLRLEREHSLSFLEFNYMILQAYDF 184          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_BRUAB4.494e-3240.57Tyrosyl-tRNA synthetase OS=Brucella abortus GN=tyr... [more]
SYY_BRUA24.494e-3240.57Tyrosyl-tRNA synthetase OS=Brucella abortus (strai... [more]
SYY_UREPA5.870e-3243.43Tyrosyl-tRNA synthetase OS=Ureaplasma parvum GN=ty... [more]
SYY_UREP25.870e-3243.43Tyrosyl-tRNA synthetase OS=Ureaplasma parvum serov... [more]
SYY_SHIFL5.870e-3240.00Tyrosyl-tRNA synthetase OS=Shigella flexneri GN=ty... [more]
SYY_SHIF85.870e-3240.00Tyrosyl-tRNA synthetase OS=Shigella flexneri serot... [more]
SYY_SHIBS5.870e-3240.00Tyrosyl-tRNA synthetase OS=Shigella boydii serotyp... [more]
SYY_MYCMO7.666e-3244.71Tyrosyl-tRNA synthetase OS=Mycoplasma mobile GN=ty... [more]
SYY_LACPL7.666e-3240.11Tyrosyl-tRNA synthetase OS=Lactobacillus plantarum... [more]
SYY_BARQU7.666e-3242.29Tyrosyl-tRNA synthetase OS=Bartonella quintana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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