CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACA2 (Tyrosyl-tRNA synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 73/179 (40.78%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+++ L  RGL++ +T +   +    NE+ +++Y GFDPTA+SLH+G+LL I+ L  F   GH  +AL+GGAT  +GDPSGK  ER     ++ ++  +K    +S+      G +  VI NN+DW    S ++FL+ VG+   I  M+AK++V  R+E+  G+S+TEFSY +LQ YDF
Sbjct:    3 NLLEDLSFRGLIQQMTDEEGLN-KQLNEEKIRLYSGFDPTADSLHIGHLLPILTLRRFQLAGHHPIALVGGATGLIGDPSGKKAERTLNTQDIVVEWSQKIKNQLSRFLDFEAGENPAVIANNFDWIGKLSIIEFLRDVGKNFGINYMLAKDTVSSRIET--GISYTEFSYMILQSYDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AGRT5 (Tyrosyl-tRNA synthetase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 70/175 (40.00%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  252 LERRGLLESITSD-NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RG +  I+ +  L  L +  ++T+  Y G+DPTA SLH+G+L  I++L W  + GHQ ++L+GG T  VGDPS K   R  + ID +E NI  +   F+         +  +++NN DW +  ++L+FL+ VGR   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   12 LDERGFIHQISDEAGLDELFA--KETVTAYIGYDPTASSLHVGHLTQIMMLHWMQKTGHQPISLMGGGTGMVGDPSFKEEARKLMTIDMIEDNITSLKHVFANYLDYDRAENPALMINNADWLRGLNYLEFLRDVGRHFSVNRMLSFDSVKTRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_VIBCH (Tyrosyl-tRNA synthetase 1 OS=Vibrio cholerae GN=tyrS1 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  246 DILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS-----SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            D L++RGL+   T   L +L         +YCGFDPTA SLH+G+L+ +++L  F   GHQA+ALIGGAT  +GDPS K+ ER      T+++ +  +S+  + +  S     ++++ +NN DW    + +DF + VG+   +  MI +ESVK+RL   +QG+SFTEFSY LLQ YDF
Sbjct:    8 DDLQQRGLIAQSTP--LEALVERFATPQVLYCGFDPTAGSLHIGHLVPLLMLKRFQNAGHQAIALIGGATGMIGDPSFKANERVLNSAQTVQQWVSDLSQQITQLMTSQGENCASLMAVNNADWIGKINLIDFFRDVGKHFSVNAMINRESVKQRLARPDQGISFTEFSYSLLQSYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_PHOLL (Tyrosyl-tRNA synthetase 1 OS=Photorhabdus luminescens subsp. laumondii GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQ-GLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +N  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER      T+++ +  I +  S       G ++    NNYDW+ +   L FL+ +G+   +  MI KE+VK+RL  +  G+SFTEFSY LLQ YDF
Sbjct:    5 NLIKQLQERGLIAQVTDENALAERLA-QGPVSLYCGFDPTADSLHLGHLVPLLCLKRFQLAGHKPVALVGGATGLIGDPSFKATERKLNTEATVKEWVEKIRRQVSPFLDFDCGENSAKTANNYDWFGNMDVLAFLRDIGKHFSVNQMINKEAVKQRLNRDDVGISFTEFSYNLLQSYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPZ (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKTRGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPM (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M28 GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPG (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPF (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPD (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRPC (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tyrS PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTI-FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+      I G   TF     G +   ++NNYDW+   SF+DFL+ VG++  +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVLEWSDKIKGQLSTFLDFENGDNKAELVNNYDWFSQISFIDFLRDVGKYFTVNYMMSKDSVKKRIET--GISYTEFAYQIMQGYDF 177          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_BACA27.666e-3240.78Tyrosyl-tRNA synthetase OS=Bacillus amyloliquefaci... [more]
SYY_AGRT57.666e-3240.00Tyrosyl-tRNA synthetase OS=Agrobacterium tumefacie... [more]
SYY1_VIBCH7.666e-3242.13Tyrosyl-tRNA synthetase 1 OS=Vibrio cholerae GN=ty... [more]
SYY1_PHOLL7.666e-3241.11Tyrosyl-tRNA synthetase 1 OS=Photorhabdus luminesc... [more]
SYY_STRPZ1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPM1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPG1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPF1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPD1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPC1.001e-3141.34Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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