CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRTD (Tyrosyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tyrS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 74/178 (41.57%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS    ER     +T+E   + I G +S+      G +  V++NNYDW+   SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFNDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVNNYDWFGSVSFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_OENOB (Tyrosyl-tRNA synthetase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 67/176 (38.07%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASS-NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++++ L+ RG ++  T ++   LA+    K + +Y G DPTA+S+H+GNL+ + +L  F   GH+ V ++GG T  +GDPSGK+ ER  L  D  ++N+  I+K  + +FG     I+NNYDW      + FL+  G+   I  M+ ++ V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 DIIEDLKWRGSIKQTTDES--GLANLLKHKKISLYVGVDPTAKSIHIGNLIPLTILKRFQNAGHRPVIVVGGGTGMIGDPSGKASERKLLPKDVFDENVSRITKQMTRLFGKDGFEIVNNYDWLSKLDLISFLRDYGKLFSINVMLKRDVVASRLQA--GISFTEFTYQILQAIDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ACIC1 (Tyrosyl-tRNA synthetase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tyrS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 76/182 (41.76%), Postives = 110/182 (60.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF------GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L  RGL+   T  +L +L A+ N   + VYCGFDPTA SLH+G+L+ I+ L  F   GH+ +AL+GGAT  +GDPSG++ ER   D D +      I +  +              + +NN +W    + ++FL+ VG+  R+G M+AKE V  RL SEQG+S+TEFSYQ+LQ  DF
Sbjct:    3 HLLDDLAWRGLIAQST--DLEALRAAMNTGPITVYCGFDPTAPSLHIGHLVQILTLRRFQDAGHRPIALVGGATGLIGDPSGRTTERALNDPDVVAGWAERIHRQLAPFLDFTGERAGQPAIAVNNLEWTGRLTAIEFLRDVGKHFRVGRMLAKEVVAARLRSEQGISYTEFSYQILQSLDF 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_BACHK (Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensis subsp. konkukian GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  240 VVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I    S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDF
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_BACCZ (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ZK / E33L) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  240 VVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I    S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDF
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_BACC1 (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ATCC 10987) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  240 VVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I    S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDF
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVDNPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_BACAN (Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  240 VVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV----VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I    S      NV     + NNYDW  +   + FL+ +G+   +  M+AK++V  RLE+  G+SFTEFSY +LQ YDF
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLET--GISFTEFSYMILQSYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_TREDE (Tyrosyl-tRNA synthetase OS=Treponema denticola GN=tyrS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.708e-31
Identity = 73/174 (41.95%), Postives = 105/174 (60.34%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            IL+ RG ++  T  +L++L+   +K  +  Y G DPT  SLH+G+++ I  L    R GH+ V L+GG T+R+GDPSGK+  R  L  D L+KN   I K           NV  +NN DW  D +++DFL+ +G    +  M++ E+ KKR+E+  GLSF EF+YQLLQ YDF
Sbjct:    7 ILQERGFIQQCT--DLQALSDRMDKGQIAFYTGTDPTGPSLHIGHMVPIFALKHLCREGHKGVVLVGGGTSRIGDPSGKTEMRKMLSYDELDKNAASIQKQIEKFLAKDIKNVRFVNNKDWLADLNYIDFLRDIGSHFSVNKMLSFEAYKKRMET--GLSFLEFNYQLLQSYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PELUB (Tyrosyl-tRNA synthetase OS=Pelagibacter ubique GN=tyrS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.708e-31
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG----SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            RG     T +   S     EK ++ Y GFD TAESLH+G+LL I+ L    + GHQ + L+GG T R+GDPSGK   R  L  D +EKNI  I K            +  + +NNY W K+ +++ FL+ VG+   I  M++ +SVK RLE EQ LS+ EF+Y +LQ YDF
Sbjct:   11 RGFFYQCTGEENLSQLLDKEK-IRAYIGFDCTAESLHVGSLLQIMCLRLLQKHGHQPIVLLGGGTTRIGDPSGKDKTRTILSEDEIEKNINNIEKILKNFLDDKDPETKPIFVNNYTWLKNLNYISFLRDVGKHFTINKMLSFDSVKIRLEREQSLSYMEFNYMILQAYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACST (Tyrosyl-tRNA synthetase OS=Bacillus stearothermophilus GN=tyrS PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31
Identity = 79/177 (44.63%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  252 LERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE------KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T  D LR L   NE+ + +YCGFDPTA+SLH+G+L  I+ +  F + GH+ +AL+GGAT  +GDPSGK  ER     +T+E      K  LG    F      +   I NNYDW      + FL+ VG+   +  M+AKESV+ R+E+  G+SFTEFSY +LQ YDF
Sbjct:    7 LQWRGLVNQTTDEDGLRKLL--NEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEA--DGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIET--GISFTEFSYMMLQAYDF 177          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_STRTD1.308e-3141.57Tyrosyl-tRNA synthetase OS=Streptococcus thermophi... [more]
SYY_OENOB1.308e-3138.07Tyrosyl-tRNA synthetase OS=Oenococcus oeni (strain... [more]
SYY_ACIC11.308e-3141.76Tyrosyl-tRNA synthetase OS=Acidothermus cellulolyt... [more]
SYY1_BACHK1.308e-3141.34Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensi... [more]
SYY1_BACCZ1.308e-3141.34Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACC11.308e-3141.34Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACAN1.308e-3141.34Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN... [more]
SYY_TREDE1.708e-3141.95Tyrosyl-tRNA synthetase OS=Treponema denticola GN=... [more]
SYY_PELUB1.708e-3142.69Tyrosyl-tRNA synthetase OS=Pelagibacter ubique GN=... [more]
SYY_BACST2.231e-3144.63Tyrosyl-tRNA synthetase OS=Bacillus stearothermoph... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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