CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRS7 (Tyrosyl-tRNA synthetase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 73/179 (40.78%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     E  +D  +K    +S       G +   ++NNYDW+   SF+DFL+ VG+   +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERILQTKETVLDWSQKIKEQLSCFLDFDNGENKAELVNNYDWFSQISFIDFLRDVGKHFTVNYMMSKDSVKKRIET--GISYTEFAYQVMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRMU (Tyrosyl-tRNA synthetase OS=Streptococcus mutans GN=tyrS PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 71/178 (39.89%), Postives = 110/178 (61.80%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + + L+ RGL+   T+D      S ++  +  Y G+DPTA+SLHLG+L+ I+V+      GH+  AL+GGAT  +GDPS K  ER     +T++  +  I            G +   ++NNYDW    +F+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    3 IFEELKARGLVFQ-TTDEEALKKSLDDGQVSFYTGYDPTADSLHLGHLVPILVMRHLQLAGHKPYALVGGATGLIGDPSFKDDERSLQTKETVKNWVQSIRSQLERFIDFKHGDNKAQMVNNYDWMGKITFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRGG (Tyrosyl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 73/179 (40.78%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++VD L+ RGL  +S   D LR   +    T   YCGFDPTA SLH+G+L+ ++ +    + G + +AL+GGAT ++GDP   + ER   D +T+    + + G  + F T  G +   ++NN DW    S ++FL+ +G+  R+  M+ K+SV +RLES++G+S+TEFSYQLLQG DF
Sbjct:    3 DIVDELKWRGLFAQSTDEDALRKALADGPVTF--YCGFDPTAASLHVGHLVQVLTMRRLQQAGLKPLALVGGATGQIGDPR-PTAERTLNDPETIAAWVQRLRGQIEPFLTFEGPNAATMVNNLDWTAGMSAIEFLRDIGKHFRVNKMLTKDSVARRLESQEGISYTEFSYQLLQGMDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STREM (Tyrosyl-tRNA synthetase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 73/179 (40.78%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     E  +D  +K    +S       G +   ++NNYDW+   SF+DFL+ VG+   +  M++K+SVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERILQTKETVLDWSQKIKEQLSCFLDFDNGENKAELVNNYDWFSQISFIDFLRDVGKHFTVNYMMSKDSVKKRIET--GISYTEFAYQVMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHILO (Tyrosyl-tRNA synthetase OS=Rhizobium loti GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 67/174 (38.51%), Postives = 103/174 (59.20%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +  RG +  I+ +       + E T+  Y G+D TA SLH+GNL+   +L W    GH+ +AL+GG T+ +GDPS +  +R  L  + +  NI GI + F  I     G ++ +++NN DW    ++++FL+ VGR   +  M+  +SVK RL+ EQ LSF EF+Y +LQGYDF
Sbjct:   12 MSERGFIHQISDETGLDQLFAKE-TVTAYVGYDATATSLHIGNLISATMLYWLQETGHRPIALMGGGTSMIGDPSFRDDQRSLLTPEAIATNIEGIKRIFGRILRFGDGPNDAIMVNNADWLMKLNYVEFLRDVGRHFSVNRMLTFDSVKLRLDREQSLSFLEFNYMILQGYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEAB (Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.490e-31
Identity = 68/176 (38.64%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +LE RG +   T  D L +  ++   T   Y GFD TA+SLH+G+L G++++ W  + GH+ + LIGGAT R+GDPS +   RP L    ++ NI GI++ FS      +  ++NN +W     +L+FL +VGR   I  ++  +++++RL+ E  LSF EF Y LLQ YDF
Sbjct:    9 DLIALLEERGFVHQCTDRDGLAAHLAAGPAT--AYLGFDATADSLHIGHLQGLMLMRWLQKAGHRPLLLIGGATTRIGDPSFRDSSRPILTEAQIQANIDGIARVFSRYVELHDDSLVNNAEWLDGVGYLEFLDRVGRHFSINRLLTFDAIRQRLDREHSLSFLEFGYTLLQAYDF 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ZYMMO (Tyrosyl-tRNA synthetase OS=Zymomonas mobilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 70/176 (39.77%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +LE RG +  IT  + +SL   +++  +  Y GFDPTA SLH+G+LL I++L    + GH+ + L+GG T ++GDPS K   R  LD DT++ NI  I + F        G ++ V+++N +W     ++ FL+ VG+   +  M++ +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   11 LLETRGYIHQIT--DAKSLDEKASQSVIAAYIGFDPTAASLHVGSLLQIMMLRRLQQAGHKPIVLMGGGTGKIGDPSFKDEARKLLDEDTIKANIASIKRVFEHFLHFGDGENDAVMVDNAEWLDRLEYIPFLRDVGQHFSVNRMLSFDSVKLRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEA8 (Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa (strain LESB58) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 68/176 (38.64%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +LE RG +   T  D L +  ++   T   Y GFD TA+SLH+G+L G++++ W  + GH+ + LIGGAT R+GDPS +   RP L    ++ NI GI++ FS      +  ++NN +W     +L+FL +VGR   I  ++  +++++RL+ E  LSF EF Y LLQ YDF
Sbjct:    9 DLIALLEERGFVHQCTDRDGLAAHLAAGPAT--AYLGFDATADSLHVGHLQGLMLMRWLQKAGHRPLLLIGGATTRIGDPSFRDSSRPILTEAQIQANIDGIARVFSRYVELHDDSLVNNAEWLDGVGYLEFLDRVGRHFSINRLLTFDAIRQRLDREHSLSFLEFGYTLLQAYDF 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCS5 (Tyrosyl-tRNA synthetase OS=Mycoplasma synoviae (strain 53) GN=tyrS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 77/177 (43.50%), Postives = 106/177 (59.89%), Query Frame = 3
Query:  231 HPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            H  + ++ +R  L +    +   SL     K   VY GFDPTA+SLHLGN + I+ L  F +    A+A++GGAT  +GDPS +S ER  L  + L KN         +   S  + + +NY+ +KD SFLDFLK +G+   +  M+AK+SVK RL   QGLSFTEFSYQ++QGYDF
Sbjct:    2 HKVLTELRDREILKDISNEEKFLSLP----KNSGVYVGFDPTADSLHLGNYVQIVNLIRFKKHNWNALAVLGGATGMIGDPSFRSTERVLLSTEELLKN----KNKIKSQLESFGLKVFDNYEIYKDISFLDFLKNIGKLINVSYMLAKDSVKDRL--AQGLSFTEFSYQIIQGYDF 168          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_PSEAE (Tyrosyl-tRNA synthetase 1 OS=Pseudomonas aeruginosa GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.476e-31
Identity = 68/176 (38.64%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +LE RG +   T  D L +  ++   T   Y GFD TA+SLH+G+L G++++ W  + GH+ + LIGGAT R+GDPS +   RP L    ++ NI GI++ FS      +  ++NN +W     +L+FL +VGR   I  ++  +++++RL+ E  LSF EF Y LLQ YDF
Sbjct:    9 DLIALLEERGFVHQCTDRDGLAAHLAAGPAT--AYLGFDATADSLHVGHLQGLMLMRWLQKAGHRPLLLIGGATTRIGDPSFRDSSRPILTEAQIQANIDGIARVFSRYVELHDDSLVNNAEWLDGVGYLEFLDRVGRHFSINRLLTFDAIRQRLDREHSLSFLEFGYTLLQAYDF 182          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_STRS76.490e-3140.78Tyrosyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYY_STRMU6.490e-3139.89Tyrosyl-tRNA synthetase OS=Streptococcus mutans GN... [more]
SYY_STRGG6.490e-3140.78Tyrosyl-tRNA synthetase OS=Streptomyces griseus su... [more]
SYY_STREM6.490e-3140.78Tyrosyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYY_RHILO6.490e-3138.51Tyrosyl-tRNA synthetase OS=Rhizobium loti GN=tyrS ... [more]
SYY_PSEAB6.490e-3138.64Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa ... [more]
SYY_ZYMMO8.476e-3139.77Tyrosyl-tRNA synthetase OS=Zymomonas mobilis GN=ty... [more]
SYY_PSEA88.476e-3138.64Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa ... [more]
SYY_MYCS58.476e-3143.50Tyrosyl-tRNA synthetase OS=Mycoplasma synoviae (st... [more]
SYY1_PSEAE8.476e-3138.64Tyrosyl-tRNA synthetase 1 OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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