CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_VIBFM (Tyrosyl-tRNA synthetase OS=Vibrio fischeri (strain MJ11) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERP----ELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T+D  L    S++ +TL  YCGFDPTA+SLH+G+L+ ++VL  F + GH+ +AL+GGAT  +GDPS K+ ER     E+  D + K    +S         +   ++NN DW    + ++F++ VG+   +  MI KESVK+R++ E  G+SFTEFSY LLQ YDF
Sbjct:   11 LKARGLIAQCTADEELAEHLSTDCRTL--YCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNTNEVVGDWVNKIKAQVSAFVDFTEEKNGAEVVNNLDWIGQINVIEFMRDVGKHFSVNAMIQKESVKQRIDREGSGISFTEFSYMLLQSYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_VIBF1 (Tyrosyl-tRNA synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERP----ELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T+D  L    S++ +TL  YCGFDPTA+SLH+G+L+ ++VL  F + GH+ +AL+GGAT  +GDPS K+ ER     E+  D + K    +S         +   ++NN DW    + ++F++ VG+   +  MI KESVK+R++ E  G+SFTEFSY LLQ YDF
Sbjct:   11 LKARGLIAQCTADEELAEHLSTDCRTL--YCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNTNEVVGDWVNKIKAQVSAFVDFTEEKNGAEVVNNLDWIGQINVIEFMRDVGKHFSVNAMIQKESVKQRIDREGSGISFTEFSYMLLQSYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_FUSNN (Tyrosyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 65/182 (35.71%), Postives = 109/182 (59.89%), Query Frame = 3
Query:  225 GRHPNVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            G+  NV D+L+ RG L+ +T  + +R +    + T   Y GFDPTA+SLH+G+ + ++ ++   + GH+ +AL GG T  +GDPSG+S  R  + ++ ++ N+  I K       F     ++ NN DW ++ ++++FL+ VG    +  M+A E  K R+E+  GLSF EF+Y ++Q YDF
Sbjct:    3 GKMANVYDVLKERGYLKQLTHEEEIREILGKEKVTF--YIGFDPTADSLHVGHFIAMMFMAHMQQHGHRPIALAGGGTGMIGDPSGRSDMRTMMTVEMIDHNVECIKKQMQKFIDFSEDKAILANNADWLRNLNYIEFLRDVGEHFSVNRMLAAECYKSRMEN--GLSFLEFNYMIMQAYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANAPZ (Tyrosyl-tRNA synthetase OS=Anaplasma phagocytophilum (strain HZ) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 74/168 (44.05%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  261 RGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            RG L  +T    L  + SS   T   Y GFD TA SLH+G+L+ I++L +  R GH+ + L+GGAT +VGDPSGK   R  L  D +  N  GI +     F S +VV+++N +W  ++ +LDFL+++G    +  M+  ESVK RL  +Q LSF EFSY LLQ YDF
Sbjct:   14 RGYLHQLTDATALDGIMSSGAVT--AYIGFDCTANSLHIGSLMQIMLLRYLQRFGHKPIVLLGGATTKVGDPSGKEKTRAMLSEDNISANKEGILRVIKK-FLSEDVVVVDNAEWLGNYGYLDFLREIGSKFSVNVMLGLESVKSRLSRDQQLSFLEFSYVLLQSYDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AERHH (Tyrosyl-tRNA synthetase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  231 HPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            +P+++D L RRGL+    SD + +LA        VYCGFDPTA SLH+G+L+ +++L  F   GH  VAL+GGAT  +GDPS K+ ER     +T++  +  +S     +     G +  +++NN DW    S LDFL+ +G+   +  M+ +ESV++RL   +QG+SFTEFSY LLQ  D+
Sbjct:    3 NPHLLDELTRRGLVAQ-NSDPV-ALADHLATPRTVYCGFDPTAGSLHIGHLVPLLMLRRFQLAGHTPVALVGGATGLIGDPSFKATERNLNSSETVQGWVASLSAQIKALLPASEGLAAPLLVNNADWMGQMSALDFLRDIGKHFSVNAMLVRESVRQRLARPDQGISFTEFSYALLQSQDY 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEA7 (Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa (strain PA7) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 68/176 (38.64%), Postives = 105/176 (59.66%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +LE RG +   T  + L +  ++   T   Y GFD TA+SLH+G+L G++++ W  + GH+ + LIGGAT R+GDPS +   RP L    ++ NI GI + FS         ++NN +W     +L+FL QVGR   I  ++  +++++RL+ E  LSF EF Y LLQ YDF
Sbjct:    9 DLIALLEERGFVHQCTDREGLAAHLAAGPVT--AYLGFDATADSLHVGHLQGLMLMRWLQKAGHRPLLLIGGATTRIGDPSFRDSSRPILGEAQIQANIDGIVRVFSRYVALDEGSLVNNAEWLDGVGYLEFLDQVGRHFSINRLLTFDAIRQRLDREHSLSFLEFGYTLLQAYDF 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBL (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEHNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBK (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEHNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBJ (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEHNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBH (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEHNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_VIBFM1.107e-3042.61Tyrosyl-tRNA synthetase OS=Vibrio fischeri (strain... [more]
SYY_VIBF11.107e-3042.61Tyrosyl-tRNA synthetase OS=Vibrio fischeri (strain... [more]
SYY_FUSNN1.107e-3035.71Tyrosyl-tRNA synthetase OS=Fusobacterium nucleatum... [more]
SYY_ANAPZ1.107e-3044.05Tyrosyl-tRNA synthetase OS=Anaplasma phagocytophil... [more]
SYY_AERHH1.107e-3041.21Tyrosyl-tRNA synthetase OS=Aeromonas hydrophila su... [more]
SYY_PSEA71.446e-3038.64Tyrosyl-tRNA synthetase OS=Pseudomonas aeruginosa ... [more]
SYY_CLOBL1.446e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_CLOBK1.446e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_CLOBJ1.446e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_CLOBH1.446e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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