CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOB1 (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEHNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ALISL (Tyrosyl-tRNA synthetase OS=Aliivibrio salmonicida (strain LFI1238) GN=tyrS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.446e-30
Identity = 73/176 (41.48%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            L+ RGL+   T+D  L    S++ +TL  YCGFDPTA+SLH+G+L+ ++VL  F + GH+ +AL+GGAT  +GDPS K+ ER     ++  D + K    +S         +   ++NN DW  + + ++F++ +G+   + +MI KESVK+R++ E  G+SFTEFSY LLQ YDF
Sbjct:   11 LKARGLIAQCTADEELAEHLSTDCRTL--YCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNTSDVVGDWVNKIRAQVSAFVDFNESKNGAEVVNNLDWIGEINVIEFMRDIGKHFSVNSMIQKESVKQRIDREGSGISFTEFSYMLLQSYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHORT (Tyrosyl-tRNA synthetase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  249 ILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++  RG +   T  D L +L +     +  Y GFD TA+SLH+G+L+ I++L W  R GH+ V L+GG T R+GDPS +   RP L  + + +N+ GI + FS       G+++ V++NN DW    +++ FL+  GR   +  M+  +SV+ RL+ EQ LSF EF+Y +LQ YDF
Sbjct:   11 VVRDRGFIHQCTDLDGLDALLAKGP--VSAYIGFDCTADSLHVGSLIQIMLLHWLQRTGHRPVVLMGGGTTRIGDPSFRDEARPLLTDEKIGQNMAGIRQVFSRFLSFGEGATDAVMVNNADWLDGLAYIPFLRDFGRHFSVNRMLTFDSVRLRLDREQPLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHOPA (Tyrosyl-tRNA synthetase OS=Rhodopseudomonas palustris GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 70/178 (39.33%), Postives = 110/178 (61.80%), Query Frame = 3
Query:  243 VDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++L+ RG +  I+  D+L +LA+  E  +  Y G+D TA SLH+G+LL I++L W    G++ +AL+GG T RVGDPSG+   R  L  + ++ N   I  TFS       G S+ ++ +N +W    ++++ L+++GR   I  M+  +SVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    9 MNVLQSRGFIHQISDPDSLDALAAKGE--VVAYVGYDCTAASLHVGHLLSIMMLHWLQATGNKPIALMGGGTTRVGDPSGRDETRKILTYEQIDANKESIKGTFSKFIKFGDGHSDALMADNAEWLTKLNYIEMLREIGRHFSINRMLTMDSVKLRLDREQELSFIEFNYMILQSYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOBM (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEYNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOB6 (Tyrosyl-tRNA synthetase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 67/178 (37.64%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV DIL+ RG ++ +T  + +R L    +  +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +AL+GG T  +GDP+GK+  R  +  + +E N     K  + I  F     +++NN DW  + ++++FL+++G    +  M+  E  K RL  E+GLSF EF+Y L+QGYDF
Sbjct:    3 NVYDILKERGYIKQLTHEEEIRELLGKEK--ISFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALVGGGTGMIGDPTGKTDMRKMMTKEQIEYNCNCFKKQLAKIIDFSEDKAIMVNNADWLLNLNYIEFLREIGVHFSVNKMLTAECFKSRL--EKGLSFLEFNYMLMQGYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_WIGBR (Tyrosyl-tRNA synthetase OS=Wigglesworthia glossinidia brevipalpis GN=tyrS PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 73/183 (39.89%), Postives = 112/183 (61.20%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSD-NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGD---PSGKSIERPELDID----TLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++  L+ R L+  +T + N++ +    EK + +YCGFDPTA+SLH+G+L+ ++ L  F   GH  + +IGGATA +GD      KS      ++     T+E  IL I K  +    + N++ILNNY W K+   ++FL+ +GRF  I  ++ KE VKK+L+  Q +SF EFSY LLQGYD+
Sbjct:    3 DLIQELKNRKLISKLTDEINIKKILK--EKKINLYCGFDPTADSLHIGHLIPLLFLKRFSNFGHIPIIVIGGATALLGDFNIKKNKSFLEKYKNVKNWSKTIENQILNIIKYENN---NCNLIILNNYLWIKELKIINFLRDIGRFISINKILRKEIVKKKLKENQHISFMEFSYSLLQGYDY 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRAW (Tyrosyl-tRNA synthetase OS=Streptomyces avermitilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 73/179 (40.78%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  237 NVVDILERRGLLE-SITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP---SGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++VD L+ RGL+  S   D LR   +    T   YCGFDPTA SLHLGNL+ I+ +    + G++ + L+GGAT  +GDP   S +++   E+  + +E+    I+       G +  +++NN DW +  S ++FL+ VG++ R+  MIAKE+V +RL S+ G+S+TEFSYQ+LQG DF
Sbjct:    3 DIVDELKWRGLVALSTDEDALRKAFADGPVTF--YCGFDPTAPSLHLGNLVQILTMRRIQQAGNRPLGLVGGATGLIGDPKPNSERTLNSREVVAEWVERLRAQIAPLLD-FEGPNAAIMVNNLDWTQGLSAIEFLRDVGKYFRVNKMIAKEAVSRRLNSDAGISYTEFSYQILQGMDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STACT (Tyrosyl-tRNA synthetase OS=Staphylococcus carnosus (strain TM300) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 71/174 (40.80%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            LE RGL+   T ++ L ++ +  + TL  YCG DPTA+S+H+G+LL ++ L  F   GH+ + LIGG T  +GDPSGK+ ER     + +E+N+ GI      IF   G     ++NN DW    S +DFL+  G+   +  M+ K+SV+ RLE+  G+S+TEF+Y +LQ  DF
Sbjct:    9 LEWRGLIYQQTDAEGLENILNKEQVTL--YCGVDPTADSMHIGHLLPLLTLRRFQNHGHKPIVLIGGGTGMIGDPSGKTDERVLQTEEQVEQNVRGIGNQMDKIFDFSGKEAAQLVNNRDWLGKISLIDFLRDYGKHVGVNYMLGKDSVQSRLEN--GISYTEFTYMILQAIDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STAAW (Tyrosyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 73/178 (41.01%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L+ RGL+   T +  +  L +  + TL  YCG DPTA+SLH+G+LL  + L  F   GH+ + LIGG T  +GDPSGKS ER     + ++KNI GISK    IF        V++NN DW    S + FL+  G+   +  M+ K+S++ RL  E G+S+TEF+Y +LQ  DF
Sbjct:    5 LIEDLKWRGLIYQQTDEQGIEDLLNKEQVTL--YCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL--EHGISYTEFTYTILQAIDF 178          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_CLOB11.446e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_ALISL1.446e-3041.48Tyrosyl-tRNA synthetase OS=Aliivibrio salmonicida ... [more]
SYY_RHORT1.888e-3039.20Tyrosyl-tRNA synthetase OS=Rhodospirillum rubrum (... [more]
SYY_RHOPA1.888e-3039.33Tyrosyl-tRNA synthetase OS=Rhodopseudomonas palust... [more]
SYY_CLOBM1.888e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_CLOB61.888e-3037.64Tyrosyl-tRNA synthetase OS=Clostridium botulinum (... [more]
SYY_WIGBR2.466e-3039.89Tyrosyl-tRNA synthetase OS=Wigglesworthia glossini... [more]
SYY_STRAW2.466e-3040.78Tyrosyl-tRNA synthetase OS=Streptomyces avermitili... [more]
SYY_STACT2.466e-3040.80Tyrosyl-tRNA synthetase OS=Staphylococcus carnosus... [more]
SYY_STAAW2.466e-3041.01Tyrosyl-tRNA synthetase OS=Staphylococcus aureus (... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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