CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_OCEIH (Tyrosyl-tRNA synthetase OS=Oceanobacillus iheyensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.221e-30
Identity = 76/182 (41.76%), Postives = 110/182 (60.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSS--NVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++  LE RGL+   T  + L     +N+ TL  YCGFDPTA+SLH+G+L+ + +L  F + GH+ +AL+GG T  +GDPSG+S ER    PE+      K    I+K       +S   VV  NN+DW  + + +DFL+  G+   I  M+AKESV  R+  EQG++FTEFSY +LQ  D+
Sbjct:    2 DILQDLESRGLIHQTTDRERLEKHLQNNQVTL--YCGFDPTADSLHIGHLVPLTMLKRFQQAGHKPIALVGGGTGMIGDPSGRSSERSLNAPEVVHGFTSKLQQQIAKLVDMESNASENTVVARNNHDWLGNMTIIDFLRDAGKHFGINYMLAKESVSARI--EQGITFTEFSYMILQSLDY 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCCT (Tyrosyl-tRNA synthetase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tyrS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.221e-30
Identity = 71/175 (40.57%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+++ L+ RGL++ +T++  + +  +      VYCGFDPTA+SLH+G+L+ II L  F   G + +ALIGGAT  +GDPS K+ ER       ++ NI  IS     I     V  +NN DW +D S +DFL+ +G+   +  ++AKES+  R+++  GLS TEF Y +LQ +DF
Sbjct:    4 NILEELKWRGLIKQVTNE--QKILDAQNSNDAVYCGFDPTADSLHVGHLMMIITLKRFALQGFKPIALIGGATGMIGDPSFKASERVLQTKQQVDHNINKISTQLKEII--PTVSFVNNRDWLEDISLIDFLRDIGKHFNLSYLLAKESIATRIQT--GLSVTEFCYTMLQAFDF 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_EHRRW (Tyrosyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Welgevonden) GN=tyrS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.207e-30
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  336 YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            Y GFD TA SLH+G+L+ I++L +  +CGH+ + L+G  T ++GDPSGK   R  L    +++N LGI K          G S+ +++ N +W    +++DFL+ +GR   +  M+  +SVK RLE EQ LSF EF+Y LLQ YDF
Sbjct:   38 YIGFDCTARSLHIGSLMQIMILRYLQKCGHKPIVLLGNGTTKIGDPSGKDKSRTLLSSSDIQENTLGIRKVLEKFIVCGGGVSDALLVYNAEWLDKLNYIDFLRNIGRHFSVNNMLTFDSVKLRLEREQNLSFLEFNYMLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_EHRRG (Tyrosyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Gardel) GN=tyrS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.207e-30
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  336 YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            Y GFD TA SLH+G+L+ I++L +  +CGH+ + L+G  T ++GDPSGK   R  L    +++N LGI K          G S+ +++ N +W    +++DFL+ +GR   +  M+  +SVK RLE EQ LSF EF+Y LLQ YDF
Sbjct:   38 YIGFDCTARSLHIGSLMQIMILRYLQKCGHKPIVLLGNGTTKIGDPSGKDKSRTLLSSSDIQENTLGIRKVLEKFIVCGDGVSDALLVYNAEWLDKLNYIDFLRNIGRHFSVNNMLTFDSVKLRLEREQNLSFLEFNYMLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ORITI (Tyrosyl-tRNA synthetase OS=Orientia tsutsugamushi (strain Ikeda) GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 65/164 (39.63%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  282 TSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D  R    SN   +  Y GFD TA+SLH+GNL+ I++L    +CGH+++ +IGGAT ++GDPS K   R  +  D +++NI GI ++           ++V++LNN +W    ++++FL+  GR   +  M+   SVK RLE    LSF EF+Y LLQ YDF
Sbjct:   16 STDLTRLTQISNSSQIVAYIGFDCTAQSLHVGNLMQIMILRLLQQCGHKSIVVIGGATTKIGDPSEKDKLRRIITNDEIQQNISGIKRSLKKFIKFDETKNDVLLLNNQEWLDSINYINFLRDYGRAFSVNKMLTMNSVKSRLERHTPLSFLEFNYMLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ORITB (Tyrosyl-tRNA synthetase OS=Orientia tsutsugamushi (strain Boryong) GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 65/164 (39.63%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  282 TSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D  R    SN   +  Y GFD TA+SLH+GNL+ I++L    +CGH+++ +IGGAT ++GDPS K   R  +  D +++NI GI ++           ++V++LNN +W    ++++FL+  GR   +  M+   SVK RLE    LSF EF+Y LLQ YDF
Sbjct:   16 STDLTRLTQISNSSQIVAYIGFDCTAQSLHVGNLMQIMILRLLQQCGHKSIVVIGGATTKIGDPSEKDKLRRIITNDEIQQNISGIKRSLQKFIKFDETKNDVLLLNNQEWLDSINYINFLRDYGRAFSVNKMLTMNSVKSRLERHTPLSFLEFNYMLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCPU (Tyrosyl-tRNA synthetase OS=Mycoplasma pulmonis GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L++R +  +ITS+    L + +     +Y GFDPTA SLHLGN + ++ L  F   G + +A++GGAT+ +GDPS K  ER  L  +T+ +N   I K     FG     +++N D++KD + LD+L+ VG+F  + TM++++SV  R++S  GLSFTEFSYQ LQ YDF
Sbjct:    9 LIEELKKRKVFNNITSEEKVDLITLDHG---IYVGFDPTAISLHLGNYIQMVNLKRFQNVGFKTIAILGGATSMIGDPSFKDSERKLLSNETILENKKHIRKQLEN-FGFK---VIDNLDFYKDMNILDYLRSVGKFFNVSTMMSRDSVANRIQS--GLSFTEFSYQTLQAYDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCMS (Tyrosyl-tRNA synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 74/175 (42.29%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++++ L+ RGL++ IT+++    A +N     VYCGFDPTA+SLH+G+L+ II L  F     + +ALIGGAT  +GDPS K+ ER     D +E NI  IS     I    NV  +NN  W  + S +DFL+ +G+   +  ++AKES+  R+++  GLS TEF Y +LQ YDF
Sbjct:    4 SILEELKWRGLIKQITNESKILDAQNNNDA--VYCGFDPTADSLHVGHLMMIITLKRFADYNFKPIALIGGATGMIGDPSFKANERVLQTKDQVEHNINKISAQLKQII--PNVNFVNNNTWLSNISLIDFLRDIGKHFNLSYLLAKESIATRIQT--GLSVTEFCYTMLQAYDF 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MAGSA (Tyrosyl-tRNA synthetase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASS-NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            I+  RG +   T  +L +L     E     Y GFD TA SLH+G L+ I++L W+ + GH+ + L+GG T R+GDP+GK   R  L  + +  N+ GI   F+       G ++ +++NN DW    +++DFL+  G    I  M+  +SVK RLE EQ L+F EF+Y LLQGYDF
Sbjct:   11 IVTERGYMHQCT--DLEALDKRLTEGCQAAYIGFDCTATSLHVGGLMQIMLLRWWQKTGHKPIVLMGGGTTRIGDPTGKDESRKMLTDEVIATNMAGIKTVFTKYLTFGEGKTDALMVNNADWLDKLNYIDFLRDYGHHFTINRMLTFDSVKLRLEREQPLTFLEFNYMLLQGYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BUCBP (Tyrosyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=tyrS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 68/180 (37.78%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  240 VVDILERRGLLESITSD-NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLES-EQGLSFTEFSYQLLQGYDF 761
            ++   + R L+  IT++ +L+++   N+  + +YCGFD TA+SLH+G++L ++ L  F   GH+ V L+GG T+ +GDPS K +ER    I+ +      I+K  S       G +N +I++NY+W+K+ + L FL+ +G+   I  MI ++++++R++  +QG+SFTEFSY LLQ YDF
Sbjct:    6 LIQEFQDRNLISQITNEIDLKNILLHNK--ISLYCGFDITADSLHVGHILPLLCLRRFQNLGHRPVILMGGGTSLIGDPSFKLLERQLNSIELVHTWKQKITKQLSLFLKFNVGKNNALIVDNYEWFKNINVLTFLRDIGKHFSINQMIVRDAIQRRIKRLDQGISFTEFSYNLLQAYDF 183          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_OCEIH3.221e-3041.76Tyrosyl-tRNA synthetase OS=Oceanobacillus iheyensi... [more]
SYY_MYCCT3.221e-3040.57Tyrosyl-tRNA synthetase OS=Mycoplasma capricolum s... [more]
SYY_EHRRW4.207e-3042.47Tyrosyl-tRNA synthetase OS=Ehrlichia ruminantium (... [more]
SYY_EHRRG4.207e-3042.47Tyrosyl-tRNA synthetase OS=Ehrlichia ruminantium (... [more]
SYY_ORITI7.175e-3039.63Tyrosyl-tRNA synthetase OS=Orientia tsutsugamushi ... [more]
SYY_ORITB7.175e-3039.63Tyrosyl-tRNA synthetase OS=Orientia tsutsugamushi ... [more]
SYY_MYCPU7.175e-3041.38Tyrosyl-tRNA synthetase OS=Mycoplasma pulmonis GN=... [more]
SYY_MYCMS7.175e-3042.29Tyrosyl-tRNA synthetase OS=Mycoplasma mycoides sub... [more]
SYY_MAGSA7.175e-3039.77Tyrosyl-tRNA synthetase OS=Magnetospirillum magnet... [more]
SYY_BUCBP7.175e-3037.78Tyrosyl-tRNA synthetase OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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