CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALNS (Tyrosyl-tRNA synthetase OS=Salmonella newport (strain SL254) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALHS (Tyrosyl-tRNA synthetase OS=Salmonella heidelberg (strain SL476) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALG2 (Tyrosyl-tRNA synthetase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALDC (Tyrosyl-tRNA synthetase OS=Salmonella dublin (strain CT_02021853) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALCH (Tyrosyl-tRNA synthetase OS=Salmonella choleraesuis GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALAR (Tyrosyl-tRNA synthetase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 187          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALA4 (Tyrosyl-tRNA synthetase OS=Salmonella agona (strain SL483) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHOSK (Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/183 (40.98%), Postives = 114/183 (62.30%), Query Frame = 3
Query:  231 HP--NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            HP  + + +++ RG L   T       A S +  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  D +++NI G+ K F+       G+++ ++LNN +W    ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    4 HPKSDFLRVMQERGYLADCTDKQALDEALS-KGVVPAYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSEERPLLTPDKIDENIEGMRKVFARYLSYGEGATDALMLNNAEWLDHLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHOS4 (Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 75/184 (40.76%), Postives = 118/184 (64.13%), Query Frame = 3
Query:  231 HP--NVVDILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            HP  + + +++ RG L   T  ++++L  +  K  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  D +++NI G+ K F+       G+++ ++LNN +W    ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    4 HPKSDFLRVMQERGYLADCT--DMQALDEALSKGVVPAYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSEERPLLTPDRIDENIEGMRKVFARYLSYGEGATDALMLNNAEWLDQLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LARHH (Tyrosyl-tRNA synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 83/181 (45.86%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER----PELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            NV+  LE RGL+   T S  L+ L  S   TL  YCGFDPTA+SLHLG+L+ +++L  F   GH+ +AL+GGAT  +GDPS K+ ER    P++    ++K    +S  F +  G +  V+ NNYDW+   + L+FL+ +G+   +  MI KESV++R+  E QG+SFTEFSY LLQG DF
Sbjct:    5 NVIQELEARGLIAQQTDSGALQKLLESESVTL--YCGFDPTADSLHLGHLVPLLMLRRFQEAGHRPIALVGGATGMIGDPSFKAAERKLNTPDVIAGWVDKIRRQLS-PFLSFEGDNAAVMANNYDWFGQMNVLEFLRDIGKHFSVNAMIKKESVQQRISREDQGISFTEFSYSLLQGNDF 182          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_SALNS2.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella newport (str... [more]
SYY_SALHS2.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella heidelberg (... [more]
SYY_SALG22.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella gallinarum (... [more]
SYY_SALDC2.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella dublin (stra... [more]
SYY_SALCH2.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella choleraesuis... [more]
SYY_SALAR2.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella arizonae (st... [more]
SYY_SALA42.155e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella agona (strai... [more]
SYY_RHOSK2.155e-3440.98Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides... [more]
SYY_RHOS42.155e-3440.76Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides... [more]
SYY_LARHH2.155e-3445.86Tyrosyl-tRNA synthetase OS=Laribacter hongkongensi... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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