CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RICTY (Tyrosyl-tRNA synthetase OS=Rickettsia typhi GN=tyrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.353e-28
Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FG--SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            A + E  +  Y GFD TA SLH+G+L+ I++L    + GH  + +IGG T+++GDPSGK + R  L  + +++N  GI K+ S    FG    + +IL+N +W    ++LDFL+  GR   +  M+  +SVK RLE    LSF E +Y LLQ YDF
Sbjct:   24 AITQEVKIAAYIGFDCTATSLHIGSLMQIMILRLLQKHGHTPIVIIGGGTSKIGDPSGKEVTRKALTQEDIKRNTAGIKKSLSKFIKFGKDQGDAIILDNAEWLDSLNYLDFLRDFGRHFSVNRMLTMDSVKLRLERSHHLSFLELNYMLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NOVAD (Tyrosyl-tRNA synthetase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tyrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.353e-28
Identity = 65/180 (36.11%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  237 NVVDILERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +L  RG +  +T +D L +LA+  ++ +  Y GFDPTA SLH+G+++ I++L    + GH+ + L+GG T ++GDPS K   R  +  D +  N+  I   F        G ++ V+++N DW     ++ FL++VG+   +  M++ +SVK+RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    7 SLLRLLSERGYIHQMTDADALDALAA--KQVIPGYIGFDPTAPSLHVGSMVQIMLLRRLQQAGHKPIVLMGGGTGKIGDPSFKDEARKLMTNDVIAANVASIKTVFERFLTFGDGPTDAVMVDNADWLDRLEYIPFLREVGQHFSVNRMLSFDSVKQRLDREQSLSFLEFNYMILQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEUMM (Tyrosyl-tRNA synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=tyrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.353e-28
Identity = 71/177 (40.11%), Postives = 105/177 (59.32%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N ++ L+ RG L  +T +   + ++AS     +  Y G DPTA+SLHLG+L+  +VL  F   G +AV +IGGAT  +GDP   + ER  L  + L +N  GI++  + +FG     I+NN DW    +  DFL+  G+   I  M+ K+ V  RLE+  G+SFTEF+YQ+LQG D+
Sbjct:    2 NFIEDLKWRGALNQVTDEAGLIEAMASGE---IGAYVGTDPTADSLHLGHLIPFMVLKRFQNAGGKAVIIIGGATGAIGDPR-PTTERQLLSPEQLRQNEKGITEQVTKLFGDEKTAIVNNNDWLGKLTLTDFLRDYGKLFSINVMLKKDVVASRLET--GISFTEFTYQILQGIDY 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORT9 (Tyrosyl-tRNA synthetase OS=Borrelia turicatae (strain 91E135) GN=tyrS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.767e-28
Identity = 69/174 (39.66%), Postives = 107/174 (61.49%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKV-YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ILE+RG L+  T  NL +L++  +K   V Y G D T+ SLH+G+L+  +V++   R GH  +AL+GG T ++GDPSGK   R  L  + +EKN+  I      I   S+  IL+N  W  + ++++FL+ +G    +  M+  E+ K+R+  + GLSF EF+YQLLQ YDF
Sbjct:    5 LEILEKRGFLKQCT--NLEALSTLMDKERVVFYVGVDATSTSLHIGHLIPFMVMAHLQRQGHIPIALVGGGTTKIGDPSGKDAMRKILSKEDIEKNVKAIRAQLLRIIDFSHGYILDNSAWLDNINYIEFLRDIGVCFSVNRMLGFETYKRRI--KDGLSFIEFNYQLLQSYDF 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BEII9 (Tyrosyl-tRNA synthetase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=tyrS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.767e-28
Identity = 70/175 (40.00%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            IL  RG L    SD       +    L  Y GFD TA SLH+G+L+ I++L W  + G + + L+GG T RVGDPSGK   R  L ++ +E N  GI + FS       G ++ ++ +N +W     ++DFL+ VGR   +  M++ +SVK RLE +Q LSF EF+Y   Q YDF
Sbjct:   14 ILTERGFLHQC-SDPAGLDEKAKSGGLIAYIGFDCTAPSLHVGSLVQIMMLRWLQKTGGKPIVLMGGGTTRVGDPSGKDESRKILTLEEIEANKQGIKQVFSKFVHFGEGKTDALMADNAEWLTALHYIDFLRDVGRHFSVNRMLSMDSVKLRLERDQELSFLEFNYMCCQAYDF 187          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_RAT (Tyrosyl-tRNA synthetase, mitochondrial OS=Rattus norvegicus GN=Yars2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.767e-28
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  333 VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS-----------SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            VYCGFDPT +SLH+G+LL ++ L  F R GH  +AL+GG+TA +GDPSG++ ER  L  + +  N   + +   T+  +               +L+N  W++    +DFL  VG   R+GT++++ SV+ RL+S +G+S  EF YQ+LQ YDF
Sbjct:   70 VYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALLGDPSGRTKEREALSAECVRANARALQRGLETLAANHARLFADGRPWGTFTVLDNAAWFQKQHLMDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDF 223          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RICFE (Tyrosyl-tRNA synthetase OS=Rickettsia felis GN=tyrS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.308e-28
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  312 SNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + E  +  Y GFD TA SLH+G+L+ I++L    + GH+ + +IGG T+++GDP+ K   R  L  + + KN  GI K+ S       G S+ ++L+N +W    ++LDFL+  G +  +  M+  +SV+ RLE EQ LSF EF+Y LLQ YDF
Sbjct:   26 TKETKIAAYIGFDCTATSLHIGSLMQIMILRLLQQHGHKPIVIIGGGTSKIGDPTWKDEARKILSKEDIAKNAEGIKKSLSKFIKFGEGESDAIMLDNAEWLDSLNYLDFLRDFGSYFSVNRMLTMDSVRLRLEREQHLSFLEFNYMLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACP2 (Tyrosyl-tRNA synthetase OS=Bacillus pumilus (strain SAFR-032) GN=tyrS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.308e-28
Identity = 71/178 (39.89%), Postives = 107/178 (60.11%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER---PELDIDTLEKNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L  RGL++  T +   +   + EK +K+Y GFDPTA+SLH+G+LL I+ L  F   GH  +AL+GGAT  +GDPS K  ER   P   ++     I G +S+      G +  VI+NNYDW    + + FL+ +G+   +  M+AK+ V  R+E+  G+S+TEFSY +LQ  DF
Sbjct:    4 LMEELSFRGLIQQQTDEEGLTKLLAEEK-IKLYSGFDPTADSLHIGHLLPILTLRRFQEAGHHPIALVGGATGLIGDPSFKKAERSLNPAEIVEHWSDKIKGQLSQFLDFEAGENPAVIVNNYDWISQMNVITFLRDIGKNFGVNFMLAKDIVSSRIET--GISYTEFSYVILQSLDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RICPR (Tyrosyl-tRNA synthetase OS=Rickettsia prowazekii GN=tyrS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.015e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FG--SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +G L   T D  R  A + E  +  Y GFD TA SLH+G+L+ I++L    + GH  + +IGG T+++GDP+GK + R  L  + +++N  GI K+ S    FG    + +IL+N +W    ++LDFL+  G +  +  M+  +SVK RL+    LSF E +Y LLQ YDF
Sbjct:   10 KGYLNQCT-DLARLSAITQEAKIAAYIGFDCTATSLHIGSLMQIMILRLLQKHGHTPIVIIGGGTSKIGDPAGKDVTRKALTQEDIKRNAEGIKKSLSKFIKFGKDQGDAIILDNAEWLDSLNYLDFLRDFGSYFSVNRMLTMDSVKLRLDRSHHLSFLELNYMLLQSYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STAES (Tyrosyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tyrS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.937e-28
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L+ RGL+   T +  +  L +  + TL  YCG DPTA+SLH+G+LL  + L  F   GH+ + LIGG T  +GDPSGKS ER       +E N+ G+S     +F         ++NN DW    S + FL+  G+   +  M+ K+S++ RL  E G+S+TEF+Y +LQ  DF
Sbjct:    5 LIEDLKWRGLIYQQTDEEGIEELLNKEQVTL--YCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTESQVEANVKGLSNQMHRLFEFGSDKGAKLVNNKDWLGQISLISFLRDYGKHVGVNYMLGKDSIQTRL--EHGISYTEFTYTILQAIDF 178          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_RICTY1.353e-2841.03Tyrosyl-tRNA synthetase OS=Rickettsia typhi GN=tyr... [more]
SYY_NOVAD1.353e-2836.11Tyrosyl-tRNA synthetase OS=Novosphingobium aromati... [more]
SYY_LEUMM1.353e-2840.11Tyrosyl-tRNA synthetase OS=Leuconostoc mesenteroid... [more]
SYY_BORT91.767e-2839.66Tyrosyl-tRNA synthetase OS=Borrelia turicatae (str... [more]
SYY_BEII91.767e-2840.00Tyrosyl-tRNA synthetase OS=Beijerinckia indica sub... [more]
SYYM_RAT1.767e-2840.26Tyrosyl-tRNA synthetase, mitochondrial OS=Rattus n... [more]
SYY_RICFE2.308e-2840.26Tyrosyl-tRNA synthetase OS=Rickettsia felis GN=tyr... [more]
SYY_BACP22.308e-2839.89Tyrosyl-tRNA synthetase OS=Bacillus pumilus (strai... [more]
SYY_RICPR3.015e-2838.60Tyrosyl-tRNA synthetase OS=Rickettsia prowazekii G... [more]
SYY_STAES3.937e-2838.20Tyrosyl-tRNA synthetase OS=Staphylococcus epidermi... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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