CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STAEQ (Tyrosyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.937e-28
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L+ RGL+   T +  +  L +  + TL  YCG DPTA+SLH+G+LL  + L  F   GH+ + LIGG T  +GDPSGKS ER       +E N+ G+S     +F         ++NN DW    S + FL+  G+   +  M+ K+S++ RL  E G+S+TEF+Y +LQ  DF
Sbjct:    5 LIEDLKWRGLIYQQTDEEGIEELLNKEQVTL--YCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTESQVEANVKGLSNQMHRLFEFGSDKGAKLVNNKDWLGQISLISFLRDYGKHVGVNYMLGKDSIQTRL--EHGISYTEFTYTILQAIDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CORGL (Tyrosyl-tRNA synthetase OS=Corynebacterium glutamicum GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.142e-28
Identity = 69/178 (38.76%), Postives = 103/178 (57.87%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  RGL+   T  +L +L       + +YCGFDPT  SLH G+L+ +++L  F + GH  + L GGAT  +GDP     ER     DT+    + I G    F    G     ++NN +W  + S + FL+ VG+   + TM+A+++VK+RLES+ G+S+TEFSY LLQ  D+
Sbjct:    2 NIIDELSWRGLINQST--DLEALREEASTPITLYCGFDPTGPSLHAGHLVPLLMLRRFQQAGHNPIVLAGGATGMIGDPRDVG-ERTMNSADTVSDWAERISGQLSRFVDFDGEHAARLVNNAEWTNEMSVVTFLRDVGKHFSLNTMLARDTVKRRLESD-GISYTEFSYMLLQANDY 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOTH (Tyrosyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.142e-28
Identity = 65/177 (36.72%), Postives = 104/177 (58.76%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +V + L+ RG +  +T +         EK +  Y GFDPTA+SLH+G+ L ++V++   + GH+ +ALIGG TA VGDP+G++  R  +  + ++ N     K  S    FG    ++++N DW  D ++++FL+ +G    +  M+  E  K RL  E+GLSF EF+Y L+Q YDF
Sbjct:    3 SVFETLKERGYIAQLTHEEKIKELLEKEK-ITFYIGFDPTADSLHVGHFLQMMVMAHMQKAGHRPIALIGGGTAMVGDPTGRTDMRKMMTREEIKHNADCFKKQLSKFIEFGEGKAIMVDNADWLLDLNYIEFLRDIGVHFSVNRMLTAECFKSRL--ERGLSFIEFNYMLMQSYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RICAH (Tyrosyl-tRNA synthetase OS=Rickettsia akari (strain Hartford) GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 63/154 (40.91%), Postives = 92/154 (59.74%), Query Frame = 3
Query:  312 SNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + E  +  Y GFD TA SLH+G+L+ I++L    R GH+ + +IGG T+++GDP+ K   R  L  + + KN  GI K+ S       G S+ ++ +N +W    ++L+FL+  G    I  M+  +SVK RLE EQ LSF EF+Y LLQ YDF
Sbjct:   26 TKETKIAAYIGFDCTATSLHIGSLMQIMILRLLQRHGHKPIVIIGGGTSKIGDPTWKDEARKILSKEDIAKNAKGIKKSLSKFIKFGDGKSDAIMFDNVEWLDSLNYLEFLRDFGVHFSINRMLTMDSVKLRLEREQHLSFLEFNYMLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MACCJ (Tyrosyl-tRNA synthetase OS=Macrococcus caseolyticus (strain JCSC5402) GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 71/177 (40.11%), Postives = 106/177 (59.89%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVI-LNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ L  RGL+   T       A  N++++ VYCG DPTA+SLH+G+LL  + L  F   GH+ V LIGGAT  +GDPSG++ ER    +  ++ N+ GISK    +  FG+ N  I ++N DW      L FL+  G+   +  ++ K+S+  RLE+  G+SFTEF+Y +LQ  DF
Sbjct:    5 LLEDLRWRGLIYQETHPEEME-ALLNKESVSVYCGTDPTADSLHIGHLLPFMTLKRFQAHGHRPVVLIGGATGMIGDPSGRTDERTLQTLAQVQHNVDGISKQMEQLFDFGTENGAIRVDNKDWLGKIDLLTFLRDYGKHVGVNYLLNKDSIASRLET--GISFTEFTYTILQAIDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEIXX (Tyrosyl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 69/178 (38.76%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKT---FSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV D L  RGL+   T +       + E  +  YCGFDPTA SLHLGNL+ ++ +      GH+   L+GG+T  +GDP   S ER     +T+ + +  + +    F +  G + V ++NN DW    S +DFL+++G+  R+G M+ K++V  RL S++G+S+TEFSYQ+LQG D+
Sbjct:   23 NVWDELIWRGLVYVSTDEAALKQLLAGEP-IAYYCGFDPTAPSLHLGNLVQLLTMRRLQLAGHRPFGLVGGSTGLIGDPK-PSAERTLNAKETVAEWVGSLREQVTRFLSAEGDNAVRLVNNLDWTAPLSAIDFLREIGKHFRVGAMLKKDAVAARLNSDEGISYTEFSYQILQGLDY 198          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BRAJA (Tyrosyl-tRNA synthetase OS=Bradyrhizobium japonicum GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 66/178 (37.08%), Postives = 104/178 (58.43%), Query Frame = 3
Query:  243 VDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++IL+ RG +   +  + L +LA+  E T   Y G+D TA SLH+GN L +++L W  + G++ + L+GG T  VGDPSGK   R    +  +E N   I   F+ +     G S+ V+L+N +W    ++++ L+ VGR   +  M+  +SV+ RLE EQ +SF EF+Y + Q YDF
Sbjct:    9 LNILQERGFIHQCSDFEGLDALAAKGEAT--AYVGYDCTARSLHIGNYLTMMMLHWLQQSGNKPITLMGGGTTMVGDPSGKDETRAMRTVAEIEANKESIRGVFAKVLRYGDGKSDAVMLDNAEWLTKLNWIEMLRDVGRHFSVNRMLTMDSVRLRLEREQEMSFIEFNYMVCQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY1_CLOAB (Tyrosyl-tRNA synthetase 1 OS=Clostridium acetobutylicum GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 65/177 (36.72%), Postives = 104/177 (58.76%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV+D L  RG  +  T +       S EK +  Y GFDPT +SLH+G+ + +++++   + GH+ + LIGG TA VGDP+GK+  R  L  + +  N+  + K  S    F     +I+NN +W    ++++FL++VG    +  M+  E  K+R+  E+GLSF EF+Y L+QG+DF
Sbjct:    3 NVLDELIERGYAKQFTHEEETRKLLSEEK-VTFYIGFDPTGDSLHVGHFIALMLMARMQKAGHRPIVLIGGGTAMVGDPTGKTDMRKMLTREEINHNVECLKKQMSRFIDFSDDKAIIVNNAEWLMGQNYIEFLREVGVHFSVNKMLTAECFKQRM--EKGLSFLEFNYMLMQGFDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANP2 (Tyrosyl-tRNA synthetase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 70/171 (40.94%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG-SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L  RG +    SD  R  A + E  +  Y GFD TA SLH G+LL I++L    R GH  +AL+GG T ++GDPSGK   R  L    +E NI  I K F+      +   + NN  W  +  ++  L++VG    I  M+  +SVK RLE EQ L+F EF+Y +LQ YDF
Sbjct:   14 LHERGYIHQC-SDLERLDAKAAEGPITAYIGFDATASSLHAGHLLSIMMLRTLQRTGHNPIALMGGGTTKIGDPSGKDEARKMLTDQQIEDNIASIRKVFARFLDFGAGAKMENNASWLDELKYIPLLREVGPHFTINRMLTFDSVKLRLEREQPLTFLEFNYMILQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCPE (Tyrosyl-tRNA synthetase OS=Mycoplasma penetrans GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 65/181 (35.91%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  228 RHPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ N+++ L++RG +      N   +     K    Y GFDPTA+SLH+G+ L ++ +    + G+  V ++GG T  VGDPSG+S  R  LD  T++ N   + K  S      G +  V++NN DW    ++++FL++ G    +  M+A E+ K R E E GLSF EF+Y L+Q YDF
Sbjct:    2 KNKNILEFLKKRGYIYQ--GSNFDLIEKELIKGTSFYIGFDPTADSLHVGHFLTMMAVKHLQKAGNNPVIVVGGGTGSVGDPSGRSEIRKILDRKTIDYNCECLKKQMSKFISFEGKNKAVMVNNADWLLKINWIEFLREFGVCFSVNKMLAAEAFKVRFEQESGLSFLEFNYMLMQAYDF 180          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_STAEQ3.937e-2838.20Tyrosyl-tRNA synthetase OS=Staphylococcus epidermi... [more]
SYY_CORGL5.142e-2838.76Tyrosyl-tRNA synthetase OS=Corynebacterium glutami... [more]
SYY_CLOTH5.142e-2836.72Tyrosyl-tRNA synthetase OS=Clostridium thermocellu... [more]
SYY_RICAH6.716e-2840.91Tyrosyl-tRNA synthetase OS=Rickettsia akari (strai... [more]
SYY_MACCJ6.716e-2840.11Tyrosyl-tRNA synthetase OS=Macrococcus caseolyticu... [more]
SYY_LEIXX6.716e-2838.76Tyrosyl-tRNA synthetase OS=Leifsonia xyli subsp. x... [more]
SYY_BRAJA6.716e-2837.08Tyrosyl-tRNA synthetase OS=Bradyrhizobium japonicu... [more]
SYY1_CLOAB6.716e-2836.72Tyrosyl-tRNA synthetase 1 OS=Clostridium acetobuty... [more]
SYY_XANP28.771e-2840.94Tyrosyl-tRNA synthetase OS=Xanthobacter autotrophi... [more]
SYY_MYCPE8.771e-2835.91Tyrosyl-tRNA synthetase OS=Mycoplasma penetrans GN... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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