CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_COREF (Tyrosyl-tRNA synthetase OS=Corynebacterium efficiens GN=tyrS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 69/178 (38.76%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L  RGL+   T  +L +L  + ++ + +YCGFDPT  SLH G+L+ +++L  F + GH  + L GGAT  +GDP     ER     DT+ +    IS   S      G     ++NN +W  + S + FL+ VG+   + TM+A+++VK+RLE++ G+S+TEFSY LLQ  DF
Sbjct:    4 NIIDELSWRGLINQST--DLDALREATQEPITLYCGFDPTGPSLHAGHLVPLLMLRRFQQAGHNPIVLAGGATGMIGDPRDVG-ERTMNSADTVAEWAERISDQLSRFVDFEGEHAARLVNNAEWTNNMSVVTFLRDVGKHFPLNTMLARDTVKRRLETD-GISYTEFSYMLLQANDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_MOUSE (Tyrosyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Yars2 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27
Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  297 RSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS-----------SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            R  A S+ +T  VYCGFDPT +SLH+G+LL ++ L  F R GH  +AL+GG+TA +GDPSG++  R  L  + +  N   + +    +  +            +  +L+N  W+++   +DFL  VG   R+GT++++ SV+ RL+S +G+S  EF YQ+LQ YDF
Sbjct:   61 RRRAGSSPQT--VYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALLGDPSGRTKGREALSAECVRANAHALRRGLEALAANHARLFADGRPWGSFTVLDNAAWFQEQHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDF 224          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_TROWT (Tyrosyl-tRNA synthetase OS=Tropheryma whipplei (strain Twist) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 59/148 (39.86%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ YCGFDPTA SLH+GNL  I+++      GH+ +AL+GG+T  +GDP     ER     + +++ +  + +  S      G++  V++NN DW K  + LDFL+++G+  R+  M+ K++V  RL S +G+S+TEFSYQ+LQ  DF
Sbjct:   38 IRFYCGFDPTAPSLHVGNLAQILIMRRLQLAGHRPIALVGGSTGLIGDPRPGG-ERQLHSHEQVQEWVRALQQQLSRFLDFKGAAAAVLVNNLDWTKSLTALDFLRELGKHFRVNAMLKKDAVAARLSSTEGISYTEFSYQILQSLDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_TROW8 (Tyrosyl-tRNA synthetase OS=Tropheryma whipplei (strain TW08/27) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 59/148 (39.86%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ YCGFDPTA SLH+GNL  I+++      GH+ +AL+GG+T  +GDP     ER     + +++ +  + +  S      G++  V++NN DW K  + LDFL+++G+  R+  M+ K++V  RL S +G+S+TEFSYQ+LQ  DF
Sbjct:   38 IRFYCGFDPTAPSLHVGNLAQILIMRRLQLAGHRPIALVGGSTGLIGDPRPGG-ERQLHSHEQVQEWVRALQQQLSRFLDFKGAAAAVLVNNLDWTKSLTALDFLRELGKHFRVNAMLKKDAVAARLSSTEGISYTEFSYQILQSLDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANAMM (Tyrosyl-tRNA synthetase OS=Anaplasma marginale (strain St. Maries) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.552e-27
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 3
Query:  243 VDILERRGLLESITSD----NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN-VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ L+ RG L   T D     L +L     + +  Y GFD TA SLH+G+L+ I+V+ +  + GH+ V L+GG T ++GDPSGK   R  L    +  N  GI  T +      + VVI +N +W  +  +L+FL+++G    +  M+  +SV+ RL+ +Q LSF EFSY LLQ YDF
Sbjct:    8 LNTLQVRGYLHQCTDDVALDELMAL-----QPITAYIGFDCTARSLHIGSLMQIMVMRYLQKFGHKIVVLLGGGTTKIGDPSGKDKARAMLSEAEIAANKAGILATINKFLNQGDGVVIADNAEWLGEVRYLEFLREIGSKFSVNAMLGLDSVRSRLDRDQNLSFLEFSYVLLQSYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_TREPA (Tyrosyl-tRNA synthetase OS=Treponema pallidum GN=tyrS PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 71/172 (41.28%), Postives = 95/172 (55.23%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RG +   T  +  S A  +   L  Y G DPT  SLH+G++L +  L      GH+   LIGG TAR+GDPSGK+  R  LD  TL+     I         F   +V  +NN DW    +++DFL++VG    +  M+  E+ KKRLE+  GLSF EF+YQLLQ YDF
Sbjct:    8 LQARGFIRQCTDLSALS-ARMDAGPLTFYVGVDPTGSSLHVGHMLPMFALKHLCDAGHRGCVLIGGGTARIGDPSGKTSMRKMLDYATLDAYAGAIVAQLDHFLSFDHRHVFYVNNRDWLAHLNYIDFLREVGAHFSVNKMLTYEAYKKRLET--GLSFLEFNYQLLQSYDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_EHRCR (Tyrosyl-tRNA synthetase OS=Ehrlichia chaffeensis (strain Arkansas) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/177 (34.46%), Postives = 101/177 (57.06%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +  L  RG     T+ ++     S ++ +  Y GFD TA+SLH+G+L+ +++L    + GH+ + L+G  T ++GDPSGK   R  L    +E+N LGI +          G  + +++ N +W    ++++FL+ +G+   +  M+  +SV+ RLE EQ LSF EF+Y LLQ YDF
Sbjct:    8 LSFLYSRGYCSQCTNISMLDQLMS-QQCVHAYIGFDCTAKSLHVGSLIQVMILRHLQKFGHKPIILLGDGTTKIGDPSGKDKSRAMLSASEIEENALGIYEVLKKFIVFGDGPHDALLVRNAEWLNGLNYIEFLRDIGKHFSVNNMLTFDSVRLRLEREQNLSFLEFNYMLLQSYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_STRT2 (Tyrosyl-tRNA synthetase 2 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL++  +SD+L  +   N   L  Y G DPTA+SLHLG+    ++     + GHQ + LIGGATA VGDP G S    E D+   EK      K  + I       I+NNYDW K+   +DFL++ G+    G M  KE VK++  +  G+SFTEFSY LLQG DF
Sbjct:    7 LQWRGLVKQYSSDSL--IEKLNNGKLTFYIGTDPTADSLHLGHYSSFLIAKRLAKYGHQPIILIGGATALVGDPRGTS----ERDLAEQEKIFDNFEKLKNQIQKIFPYEIVNNYDWTKNIMAIDFLREFGKHITAGYMSNKELVKRQFAT--GISFTEFSYMLLQGMDF 168          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_STRT1 (Tyrosyl-tRNA synthetase 2 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL++  +SD+L  +   N   L  Y G DPTA+SLHLG+    ++     + GHQ + LIGGATA VGDP G S    E D+   EK      K  + I       I+NNYDW K+   +DFL++ G+    G M  KE VK++  +  G+SFTEFSY LLQG DF
Sbjct:    7 LQWRGLVKQYSSDSL--IEKLNNGKLTFYIGTDPTADSLHLGHYSSFLIAKRLAKYGHQPIILIGGATALVGDPRGTS----ERDLAEQEKIFDNFEKLKNQIQKIFPYEIVNNYDWTKNIMAIDFLREFGKHITAGYMSNKELVKRQFAT--GISFTEFSYMLLQGMDF 168          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CAUCR (Tyrosyl-tRNA synthetase OS=Caulobacter crescentus GN=tyrS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 67/175 (38.29%), Postives = 101/175 (57.71%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            LE RG +  IT +D L + A      +  Y GFD TA SLH+G+L+ I++L    + GH+ + L+GG T +VGDP+GK   R  L    ++ NI GI   FS       G ++ ++++N  W   F ++ FL++ G    +  M+A +SVK RLE EQ ++F EF+Y L+Q  DF
Sbjct:   15 LEARGYIHQITHADELDTAAQGGP--IVAYIGFDATAPSLHVGSLIQIMLLRRLQQAGHKPIVLMGGGTTKVGDPTGKDESRKLLSDADIQANIAGIKTVFSKFLTFGDGPTDAIMVDNDVWLSKFGYVQFLREYGVHFTVNRMLAFDSVKLRLEREQPMTFLEFNYMLMQAVDF 187          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_COREF8.771e-2838.76Tyrosyl-tRNA synthetase OS=Corynebacterium efficie... [more]
SYYM_MOUSE1.496e-2738.55Tyrosyl-tRNA synthetase, mitochondrial OS=Mus musc... [more]
SYY_TROWT1.954e-2739.86Tyrosyl-tRNA synthetase OS=Tropheryma whipplei (st... [more]
SYY_TROW81.954e-2739.86Tyrosyl-tRNA synthetase OS=Tropheryma whipplei (st... [more]
SYY_ANAMM2.552e-2738.20Tyrosyl-tRNA synthetase OS=Anaplasma marginale (st... [more]
SYY_TREPA3.333e-2741.28Tyrosyl-tRNA synthetase OS=Treponema pallidum GN=t... [more]
SYY_EHRCR3.333e-2734.46Tyrosyl-tRNA synthetase OS=Ehrlichia chaffeensis (... [more]
SYY2_STRT23.333e-2742.94Tyrosyl-tRNA synthetase 2 OS=Streptococcus thermop... [more]
SYY2_STRT13.333e-2742.94Tyrosyl-tRNA synthetase 2 OS=Streptococcus thermop... [more]
SYY_CAUCR5.685e-2738.29Tyrosyl-tRNA synthetase OS=Caulobacter crescentus ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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