CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CAUCN (Tyrosyl-tRNA synthetase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=tyrS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 67/175 (38.29%), Postives = 101/175 (57.71%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            LE RG +  IT +D L + A      +  Y GFD TA SLH+G+L+ I++L    + GH+ + L+GG T +VGDP+GK   R  L    ++ NI GI   FS       G ++ ++++N  W   F ++ FL++ G    +  M+A +SVK RLE EQ ++F EF+Y L+Q  DF
Sbjct:   15 LEARGYIHQITHADELDTAAQGGP--IVAYIGFDATAPSLHVGSLIQIMLLRRLQQAGHKPIVLMGGGTTKVGDPTGKDESRKLLSDADIQANIAGIKTVFSKFLTFGDGPTDAIMVDNDVWLSKFGYVQFLREYGVHFTVNRMLAFDSVKLRLEREQPMTFLEFNYMLMQAVDF 187          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORRA (Tyrosyl-tRNA synthetase OS=Borrelia recurrentis (strain A1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.698e-27
Identity = 68/172 (39.53%), Postives = 103/172 (59.88%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN-VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +L++RG L+  T+    S     EK +  Y G D T+ SLH+G+L+  +V+    R GH  + LIGG T ++GDPSGK   R  L  + +++N+  IS     I   SN   ILNN +W    ++++FL++VG +  +  M++ E+ K+RL  + GLSF EF+YQLLQ YDF
Sbjct:    7 VLDKRGFLKQCTNLEELSTLMDREKIV-FYVGVDATSASLHIGHLIPFMVMLHLQRQGHIPIILIGGGTTKIGDPSGKDSMRKILLKEDIDENVKTISSQLLKIIDLSNGGYILNNAEWLDGINYIEFLREVGIYFSVNRMLSFETYKRRL--KDGLSFIEFNYQLLQSYDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORDL (Tyrosyl-tRNA synthetase OS=Borrelia duttonii (strain Ly) GN=tyrS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.698e-27
Identity = 68/172 (39.53%), Postives = 103/172 (59.88%), Query Frame = 3
Query:  249 ILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN-VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +L++RG L+  T+    S     EK +  Y G D T+ SLH+G+L+  +V+    R GH  + LIGG T ++GDPSGK   R  L  + +++N+  IS     I   SN   ILNN +W    ++++FL++VG +  +  M++ E+ K+RL  + GLSF EF+YQLLQ YDF
Sbjct:    7 VLDKRGFLKQCTNLEELSTLMDREKIV-FYVGVDATSASLHIGHLIPFMVMLHLQRQGHIPIILIGGGTTKIGDPSGKDSMRKILLKEDIDENVKTISSQLLKIIDLSNGGYILNNAEWLDGINYIEFLREVGIYFSVNRMLSFETYKRRL--KDGLSFIEFNYQLLQSYDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THETN (Tyrosyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 60/177 (33.90%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +V+++L+ RG +  +T +         EK +  Y GFDPTA+SLH+G+L+ I+ ++   R GH+ + L+GG TA +GDPSG++  R  L  + +++N     K       F     ++ NN  W    ++++FL+ +G    +  M+  E+ K R+  E+GL+F EF+Y L+Q YDF
Sbjct:    2 SVLEVLKERGYIAQMTHEEEIEKLLEKEK-ITFYIGFDPTADSLHVGHLIQIMTMAHMQRAGHRPIVLLGGGTALIGDPSGRTDMRKMLTKEEIDRNAEAFKKQMERFIDFSEGKAIMENNAKWLLGLNYIEFLRDIGVHFTVNRMLEAEAFKTRM--ERGLTFLEFNYMLMQAYDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THEFY (Tyrosyl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=tyrS PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 68/185 (36.76%), Postives = 108/185 (58.38%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---------GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L+ RGL+   T  D+LR   +    TL  YCGFDPTA SLH+G+L   + L+ F R GH+ +AL+GGAT  +GDP   + ER     +T+ + +  + +  S+             ++ ++L+N +W    + +  L+ +G+   I  M+A+E+VK RLE   G+S+TEFSY LLQ YD+
Sbjct:    3 DIIDDLQWRGLIAQTTDLDDLRKALADGPVTL--YCGFDPTAGSLHVGHLTQALTLARFQRAGHRPIALVGGATGMIGDPK-PNAERTLNSPETIRQWVGNLKRQLSSFLEFTPEGAEPKPTDALLLDNAEWLGKLTAIGLLRDIGKHFSINQMLARETVKTRLEG-AGMSYTEFSYVLLQSYDY 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NOCFA (Tyrosyl-tRNA synthetase OS=Nocardia farcinica GN=tyrS PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 72/180 (40.00%), Postives = 106/180 (58.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L  RGL+   T  D LR+  ++   TL  Y GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP     ER     DT+    + I    + F  +  S +  VI+NN DW    S +DFL+ +G+   +  M+A+++VK+RLE + G+S+TEFSY LLQ  D+
Sbjct:    4 DIIDELTWRGLIAQSTDLDALRAALAAGPLTL--YAGFDPTAASLHAGHLVPLLALKRFQRAGHRPIVLAGGATGLIGDPRDVG-ERTMNSSDTVAEWARRIRSQLERFVDLDDSPTGAVIVNNMDWTGPLSAVDFLRDIGKHFSVNVMLARDTVKRRLEGD-GMSYTEFSYMLLQANDY 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CLOPH (Tyrosyl-tRNA synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=tyrS PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 62/177 (35.03%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ D+L  RG +E  T +         EK +  Y GFD TA+SL  G+ L ++ +    R GH+ +AL+GG T  +GDP+GKS  R  +  +T++ N     +  S    F     +I NN DW  + ++++FL+++G    +  M+  E  K+R+  E+GL+F EF+Y L+Q YDF
Sbjct:    4 NIYDVLLERGFIEQATHEAETKELLGKEK-VTFYIGFDATADSLTAGHFLTVMAMMHMQRAGHRPIALLGGGTTMIGDPTGKSDMRSMMTRETIDHNAQCFQEQLSKFIDFSDDKAIIANNADWLLNLNYVEFLREIGVHFSVNKMLTAECYKQRM--EKGLTFFEFNYMLMQSYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_WOLWR (Tyrosyl-tRNA synthetase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.286e-26
Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG----SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ ++ RG L   T+             +  Y GFD TA SLH G+L+ I++L    + G++ + L+GG T ++GDPS K   R  L ++ + +N   I +    +       +  +I+NN DW  +  ++DFL+ +G +  +  M++ +SVK RL+ EQ LSF EF+Y LLQ YDF
Sbjct:    8 LNFIQERGYLYQCTNIEGLDQLLLQSNYIVAYIGFDCTAPSLHAGHLIQIMMLCHLQKFGYKPIVLLGGGTTKIGDPSFKDKARSILPVENINQNTSSIRRILEKMVSFNDSKTGAMIVNNADWLDNIKYIDFLRDIGAYFSVNRMLSFDSVKTRLDREQTLSFLEFNYMLLQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_WOLPM (Tyrosyl-tRNA synthetase OS=Wolbachia pipientis wMel GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.286e-26
Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG----SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++ ++ RG L   T+             +  Y GFD TA SLH G+L+ I++L    + G++ + L+GG T ++GDPS K   R  L ++ + +N   I +    +       +  +I+NN DW  +  ++DFL+ +G +  +  M++ +SVK RL+ EQ LSF EF+Y LLQ YDF
Sbjct:    8 LNFIQERGYLYQCTNIEGLDQLLLQSNYIVAYIGFDCTAPSLHAGHLIQIMMLCHLQKFGYKPIVLLGGGTTKIGDPSFKDKARSILPVENINQNTSSIRRILEKMVSFNDSKTGAMIVNNADWLDNIKYIDFLRDIGAYFSVNRMLSFDSVKTRLDREQTLSFLEFNYMLLQAYDF 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CAUSK (Tyrosyl-tRNA synthetase OS=Caulobacter sp. (strain K31) GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.286e-26
Identity = 66/175 (37.71%), Postives = 100/175 (57.14%), Query Frame = 3
Query:  252 LERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RG +  IT  D L + A+    T   Y GFD TA SLH+G+L+ I++L    + GH+ + L+GG T +VGDP+GK   R  L    +  NI GI + F+       G ++ ++++N  W   F ++ FL+  G    +  M+A +SVK RLE EQ ++F EF+Y L+Q  DF
Sbjct:   15 LQARGYIHQITHPDELDAAAAGGIVT--AYIGFDATAPSLHVGSLIQIMMLRRLQQAGHKPIVLMGGGTTKVGDPTGKDESRKLLSDADIAANIAGIKQVFAKFLTFGDGPTDAIMVDNDVWLSKFGYVQFLRDYGVHFTVNRMLAFDSVKLRLEREQPMTFLEFNYMLMQAVDF 187          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_CAUCN5.685e-2738.29Tyrosyl-tRNA synthetase OS=Caulobacter crescentus ... [more]
SYY_BORRA9.698e-2739.53Tyrosyl-tRNA synthetase OS=Borrelia recurrentis (s... [more]
SYY_BORDL9.698e-2739.53Tyrosyl-tRNA synthetase OS=Borrelia duttonii (stra... [more]
SYY_THETN2.160e-2633.90Tyrosyl-tRNA synthetase OS=Thermoanaerobacter teng... [more]
SYY_THEFY3.685e-2636.76Tyrosyl-tRNA synthetase OS=Thermobifida fusca (str... [more]
SYY_NOCFA3.685e-2640.00Tyrosyl-tRNA synthetase OS=Nocardia farcinica GN=t... [more]
SYY_CLOPH3.685e-2635.03Tyrosyl-tRNA synthetase OS=Clostridium phytofermen... [more]
SYY_WOLWR6.286e-2633.90Tyrosyl-tRNA synthetase OS=Wolbachia sp. subsp. Dr... [more]
SYY_WOLPM6.286e-2633.90Tyrosyl-tRNA synthetase OS=Wolbachia pipientis wMe... [more]
SYY_CAUSK6.286e-2637.71Tyrosyl-tRNA synthetase OS=Caulobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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