CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AYWBP (Tyrosyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=tyrS PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 66/171 (38.60%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  252 LERRGLLESITSD-NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ R L++   ++  ++ L  +N+  +K YCGFDPT+ SL +G+L+ I ++    R GH  V L+GGAT  +GDP  ++ ER  L ++   +N   I     TI  +  V  +NNY W      + FL+  G+F  I  M++K  V KRL S  G+SFTEFSY +LQ  DF
Sbjct:    7 LKWRNLIKDCNNEIQVKELLDNNQ--VKFYCGFDPTSHSLTVGHLIQITMILLMQRQGHLPVILVGGATGLIGDPK-ETEERKLLSLENSLQNAKSIESQLKTILLNKQVEFVNNYQWLSQIDIISFLRNYGKFFNINYMLSKHVVAKRLAS--GISFTEFSYMILQSLDF 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORAP (Tyrosyl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 61/173 (35.26%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +T ++GDPSGKS  R  L ++ +  N   I      I   S+   ++N +W  + ++++FL+ +G    +  M++ E+ KKRL+   GLSF EF+YQLLQ YD+
Sbjct:    5 LNLLHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHIPIVLIGDSTTKIGDPSGKSEMRKILSLEEISNNAFSIKNQLQRITKFSSKCFIHNSNWLDNLNYIEFLRDIGIHFSVNRMLSFETYKKRLDF--GLSFIEFNYQLLQSYDY 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ACHLI (Tyrosyl-tRNA synthetase OS=Acholeplasma laidlawii (strain PG-8A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG--SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            LE RG+++ + SD   +    NE+ +K Y G+DPT ESL +G+L+ I+ + +  + GH  V LIGG T  +GDP     E  E  + TLEK++    K  + I G    NV  +NNY+W      + FL+  G+   +  M+ K++V+KRLES  G+S+TEFSY +LQ  D+
Sbjct:    7 LEYRGMVKDV-SDLELAKQLLNEQKIKFYVGYDPTGESLTVGHLVQIVRMLYLQKHGHTPVVLIGGGTGLIGDPR----ETSERSLLTLEKSLENAQKIENQIKGLIKGNVEFVNNYEWLSKIDLISFLRDYGKHFSVSYMLHKDTVQKRLES--GISYTEFSYMILQSIDW 171          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PHYAS (Tyrosyl-tRNA synthetase OS=Phytoplasma australiense GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 57/147 (38.78%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  321 KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            K +K YCGFDPT++SL +G+L+ + ++S   + GH    L+GGAT  +GDP  ++ ER  L ++T  +N   +      I     +  LNNY+W+     + FL++ G+   I  M+ K++V KRL S  G+SFTEF+Y +LQ  DF
Sbjct:   29 KKIKFYCGFDPTSDSLTVGHLVQLTMMSLLEKQGHSPFILVGGATGLIGDPK-ETEERKLLSLETSLQNAKSLETQLKKILFQKKITFLNNYEWFSQLDIITFLRKYGKLFNINYMLNKQTVAKRLSS--GISFTEFTYMILQSLDF 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORGA (Tyrosyl-tRNA synthetase OS=Borrelia garinii GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 61/173 (35.26%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +T ++GDPSGKS  R  L  + +  N L I      I   S+   ++N +W  + ++++FL+ +G    +  M++ E+ K+RL+   GLSF EF+YQLLQ YD+
Sbjct:    5 LNLLYKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDTTSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTTKIGDPSGKSEMRKILSSEVINNNALSIKNQLQKITRFSSSCFIHNSNWLDNLNYIEFLRDIGIHFSVNRMLSFETYKRRLDF--GLSFIEFNYQLLQSYDY 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_NEUCR (Tyrosyl-tRNA synthetase, mitochondrial OS=Neurospora crassa GN=cyt-18 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.321e-25
Identity = 60/194 (30.93%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  225 GRHPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVV---------------ILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            G+  N  D+ E RG ++               + +  Y G DPTA SLH+G+LL ++ L W    G++A  LIGG+TA++GDP+G+   R  L       N+  I      ++ + +                 I+NN  WW     L+ L++VG   RIG M+++++VK ++    G+SF EF+Y ++QG+D+
Sbjct:   62 GKKQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDW 255          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCPA (Tyrosyl-tRNA synthetase OS=Mycobacterium paratuberculosis GN=tyrS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.077e-25
Identity = 68/178 (38.20%), Postives = 107/178 (60.11%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L  RGL+   T  +L +LA+   + + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP     ER   + DT+    + I G  + F     S +  V++NN DW +  S ++FL+ +G+   +  M+ +++V++RLE + G+S+TEFSY LLQ  D+
Sbjct:    5 ILDELGWRGLIAQST--DLDALAAE-ARPMTVYAGFDPTAPSLHAGHLVPLLALRRFQRAGHRPIVLAGGATGMIGDPRDVG-ERTLNEADTVAEWTERIRGQLERFVDFDESDTGAVVVNNLDWTRQLSAIEFLRDLGKHFSVNVMLDRDTVRRRLEGD-GISYTEFSYMLLQANDY 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORBZ (Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi (strain ZS7) GN=tyrS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.077e-25
Identity = 61/173 (35.26%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + +L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +TA++GDPSGKS  R  L  + +  N L I      I   ++   ++N +W  + ++++FL+ VG    +  M++ E+ K+R++   GLSF EF+YQLLQ YD+
Sbjct:    5 LSLLHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTAKIGDPSGKSEMRKILSSEEIGNNALLIKNQLQRITKFTSECFIHNSNWLDNLNYIEFLRDVGMHFSVNRMLSFETYKRRMDF--GLSFIEFNYQLLQSYDY 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORBU (Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi GN=tyrS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.077e-25
Identity = 61/173 (35.26%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + +L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +TA++GDPSGKS  R  L  + +  N L I      I   ++   ++N +W  + ++++FL+ VG    +  M++ E+ K+R++   GLSF EF+YQLLQ YD+
Sbjct:    5 LSLLHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTAKIGDPSGKSEMRKILSSEEIGNNALLIKNQLQRITKFTSECFIHNSNWLDNLNYIEFLRDVGMHFSVNRMLSFETYKRRMDF--GLSFIEFNYQLLQSYDY 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PHYMT (Tyrosyl-tRNA synthetase OS=Phytoplasma mali (strain AT) GN=tyrS PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.548e-24
Identity = 65/170 (38.24%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ R L+   + +    L     K +K YCGFD TA SL +G+L+ II      + GH  + L+GGAT+ +GDP  K  ER  LD   +  N   IS  F  I    +  I+NNYDW      ++FL++ G+   I  M++KE +  RL  ++GLS+ EFSY +LQ  DF
Sbjct:    7 LKWRNLITECSDEKRAKLLLDGNKKIKFYCGFDATAGSLTVGHLVQIITFLLIQKKGHFPIVLLGGATSFIGDPK-KIEERKLLDPSQILDNFNKISLQFKKILSFISFEIVNNYDWISKIDVINFLRKYGKLFNINYMLSKEVIANRL--KKGLSYAEFSYMVLQSLDF 173          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_AYWBP1.072e-2538.60Tyrosyl-tRNA synthetase OS=Aster yellows witches'-... [more]
SYY_BORAP2.389e-2535.26Tyrosyl-tRNA synthetase OS=Borrelia afzelii (strai... [more]
SYY_ACHLI2.389e-2538.95Tyrosyl-tRNA synthetase OS=Acholeplasma laidlawii ... [more]
SYY_PHYAS3.120e-2538.78Tyrosyl-tRNA synthetase OS=Phytoplasma australiens... [more]
SYY_BORGA3.120e-2535.26Tyrosyl-tRNA synthetase OS=Borrelia garinii GN=tyr... [more]
SYYM_NEUCR5.321e-2530.93Tyrosyl-tRNA synthetase, mitochondrial OS=Neurospo... [more]
SYY_MYCPA9.077e-2538.20Tyrosyl-tRNA synthetase OS=Mycobacterium paratuber... [more]
SYY_BORBZ9.077e-2535.26Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi (s... [more]
SYY_BORBU9.077e-2535.26Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi GN... [more]
SYY_PHYMT1.548e-2438.24Tyrosyl-tRNA synthetase OS=Phytoplasma mali (strai... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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