CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ONYPE (Tyrosyl-tRNA synthetase OS=Onion yellows phytoplasma GN=tyrS PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 64/171 (37.43%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  252 LERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ R L++  +++  ++ L  +N+  +K YCGFDPT+ SL +G+L+ I ++    R GH  V L+GGAT  +GDP  ++ ER  L ++   +N   I      I  +  V  +NNY W      + FL+  G+   I  M++K +V KRL S  G+SFTEFSY +LQ  DF
Sbjct:    7 LKWRNLIKDCSNETQVKELLDNNQ--VKFYCGFDPTSHSLTVGHLVQITMILLMQRQGHLPVILVGGATGLIGDPK-ETEERKLLSLENSLQNAKSIECQLKNILLNKQVEFVNNYQWLSQIDIISFLRNYGKLFNINYMLSKHAVAKRLAS--GISFTEFSYMILQSLDF 172          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_SCHPO (Tyrosyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=msy1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  333 VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPEL--------------DIDTLEKNILGISKT----FSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            VY G DPTA SLH+GNL+ ++ L  F   G     +IG ATA++GDPSG+S  R ++               +  L  +IL  ++     FS +  SS   I+ N  W+++   L FL  VG   R+  M+A++SV  RL+S  GLSF E +YQLLQ YD+
Sbjct:   32 VYLGADPTAASLHVGNLVALMPLVHFFLNGFPVFTVIGDATAQLGDPSGRSTSRKQMAETTRTANSNSIHNQLKDLSSSILSYAQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLKFLSSVGPHVRVSQMLARDSVTTRLQSPSGLSFAELTYQLLQAYDY 192          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCTU (Tyrosyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=tyrS PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.004e-23
Identity = 66/179 (36.87%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L  RGL+   T  +L +LA+  ++  + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP     ER   + DT+    + I G  + F     S    ++ NN +W    S ++FL+ +G+   +  M+A++++++RL  E G+S+TEFSY LLQ  D+
Sbjct:    5 ILDELSWRGLIAQST--DLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVG-ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGE-GISYTEFSYLLLQANDY 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCBO (Tyrosyl-tRNA synthetase OS=Mycobacterium bovis GN=tyrS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.004e-23
Identity = 66/179 (36.87%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L  RGL+   T  +L +LA+  ++  + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP     ER   + DT+    + I G  + F     S    ++ NN +W    S ++FL+ +G+   +  M+A++++++RL  E G+S+TEFSY LLQ  D+
Sbjct:    5 ILDELSWRGLIAQST--DLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVG-ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGE-GISYTEFSYLLLQANDY 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCSS (Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (strain MCS) GN=tyrS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  237 NVVDILERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L+ RGL+ +S   D L +  ++   TL  Y GFDPTA SLH G+L+ ++ L  F + GH+ + L GGAT  +GDP     ER     DT+      I G  + F     S +  ++ NN  W    S ++FL+ VG++  +  M+ +++V++RLE E G+S+TEFSY LLQ  D+
Sbjct:    3 SILDELDWRGLIAQSTDRDALAAELAAGPMTL--YSGFDPTAPSLHAGHLVPLLTLRRFQQAGHRPIVLAGGATGMIGDPRDTG-ERTLQTADTVADWADRIRGQLERFVEFDESPTGAIVENNLSWTGALSTIEFLRDVGKYFSVNVMLDRDTVRRRLEGE-GISYTEFSYMLLQANDY 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCSK (Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (strain KMS) GN=tyrS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  237 NVVDILERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L+ RGL+ +S   D L +  ++   TL  Y GFDPTA SLH G+L+ ++ L  F + GH+ + L GGAT  +GDP     ER     DT+      I G  + F     S +  ++ NN  W    S ++FL+ VG++  +  M+ +++V++RLE E G+S+TEFSY LLQ  D+
Sbjct:    3 SILDELDWRGLIAQSTDRDALAAELAAGPMTL--YSGFDPTAPSLHAGHLVPLLTLRRFQQAGHRPIVLAGGATGMIGDPRDTG-ERTLQTADTVADWADRIRGQLERFVEFDESPTGAIVENNLSWTGALSTIEFLRDVGKYFSVNVMLDRDTVRRRLEGE-GISYTEFSYMLLQANDY 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCSJ (Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (strain JLS) GN=tyrS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  237 NVVDILERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D L+ RGL+ +S   D L +  ++   TL  Y GFDPTA SLH G+L+ ++ L  F + GH+ + L GGAT  +GDP     ER     DT+      I G  + F     S +  ++ NN  W    S ++FL+ VG++  +  M+ +++V++RLE E G+S+TEFSY LLQ  D+
Sbjct:    3 SILDELDWRGLIAQSTDRDALAAELAAGPMTL--YSGFDPTAPSLHAGHLVPLLTLRRFQQAGHRPIVLAGGATGMIGDPRDTG-ERTLQTADTVADWADRIRGQLERFVEFDESPTGAIVENNLSWTGALSTIEFLRDVGKYFSVNVMLDRDTVRRRLEGE-GISYTEFSYMLLQANDY 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROAC (Tyrosyl-tRNA synthetase OS=Propionibacterium acnes GN=tyrS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.981e-23
Identity = 67/178 (37.64%), Postives = 104/178 (58.43%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP---SGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++D LE RGL+   T D     A   +  +  Y GFDPTA+SLH+G+L+ ++++      GH+ + L+GGAT  +GDP     + +   E+  + +E     +SK   T  G +   I+NNYDW   ++ LD L+ VG+   +  M+A++ V +RLES  G+S+TEFSY LLQ  DF
Sbjct:    3 DLLDDLEWRGLVADST-DREALEAHLAQGPVTFYVGFDPTAKSLHIGHLVQLMLVRALQERGHKPLLLVGGATGLIGDPKMTGERHMNDREVVAEWVESIKDQVSKYVDT-DGRNAAQIVNNYDWTVKYTALDLLRDVGKHFSVNRMLARDVVARRLES--GISYTEFSYVLLQSLDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCFO (Tyrosyl-tRNA synthetase OS=Mycobacterium fortuitum GN=tyrS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 65/178 (36.52%), Postives = 101/178 (56.74%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEK---NILGISKTFSTIFGS-SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L+ RGL+   T     +   +N   + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP     ER     DT+      I G  + F     + +  ++ NN +W    S ++FL+ +G++  +  M+ +E+V++RLE + G+S+TEFSY LLQ  DF
Sbjct:    5 ILDELDWRGLIAQSTDRETLANDLANGP-MTVYSGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDTG-ERTLNTADTVADWAGRIRGQLERFVEFDDTPTGAIVENNLNWTGRLSAIEFLRDLGKYFSVNVMLDRETVRRRLEGD-GISYTEFSYMLLQANDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_PODAN (Tyrosyl-tRNA synthetase, mitochondrial OS=Podospora anserina GN=YTS1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.496e-23
Identity = 60/213 (28.17%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  186 VHQLQSDPQTQTH----GRHPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNV-----------------VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            + Q Q+D + +      G   +  D+   RG ++     +         K +  Y G DPTA SLH+G+LL ++ + W    G+    LIGGATA++GDP+ + + R  L    L  N+  I      ++   NV                  ++NN  WW     ++ LK++G   R+G ++++++VK ++    G+SF+EF+Y L+QG+D+
Sbjct:   46 IDQAQADWEERAEKIKKGEIQHTWDMFVERGYVKDTAGSHETIRKLMLHKRIGAYTGIDPTAPSLHIGHLLPLMPIFWMYMHGYAGYTLIGGATAKIGDPTDRLVSRTPLKRTDLTMNLTKIHYQLKALW--MNVEEQARRRGFEKDWAWKRAVVNNSTWWNSLPLIEVLKRLGDSMRMGPLLSRDTVKNKMSKGDGMSFSEFTYPLMQGWDW 256          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_ONYPE2.022e-2437.43Tyrosyl-tRNA synthetase OS=Onion yellows phytoplas... [more]
SYYM_SCHPO7.684e-2439.13Tyrosyl-tRNA synthetase, mitochondrial OS=Schizosa... [more]
SYY_MYCTU1.004e-2336.87Tyrosyl-tRNA synthetase OS=Mycobacterium tuberculo... [more]
SYY_MYCBO1.004e-2336.87Tyrosyl-tRNA synthetase OS=Mycobacterium bovis GN=... [more]
SYY_MYCSS3.814e-2337.22Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (stra... [more]
SYY_MYCSK3.814e-2337.22Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (stra... [more]
SYY_MYCSJ3.814e-2337.22Tyrosyl-tRNA synthetase OS=Mycobacterium sp. (stra... [more]
SYY_PROAC4.981e-2337.64Tyrosyl-tRNA synthetase OS=Propionibacterium acnes... [more]
SYY_MYCFO6.505e-2336.52Tyrosyl-tRNA synthetase OS=Mycobacterium fortuitum... [more]
SYYM_PODAN8.496e-2328.17Tyrosyl-tRNA synthetase, mitochondrial OS=Podospor... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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