CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCLE (Tyrosyl-tRNA synthetase OS=Mycobacterium leprae GN=tyrS PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.110e-22
Identity = 63/182 (34.62%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPS--GKSIERPELDIDTLEKNILGISKTF----STIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++++ L  RGL+   T  +L +LA    +  + VY GFDPTA SLH+G+L+ ++VL  F R GH+ + L GGAT  +GDP   G+        +    + I G  + F          +  +++NN +W    S ++FL+ VG+   I  M+ ++++++RL   QG+S+TEFSY LLQ  D+
Sbjct:    4 SILNELGWRGLVAQST--DLDALADELRRGPMTVYAGFDPTAPSLHVGHLVPLLVLRRFQRAGHRPIVLAGGATGMIGDPRDIGERTLNEAYTVAEWAERIRGQLERFVEFDDVAKSRNGAIVVNNLEWTSPMSAIEFLRDVGKHFSINLMLDRDTIRRRLNG-QGISYTEFSYMLLQANDY 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_KINRD (Tyrosyl-tRNA synthetase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tyrS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIS---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +V D L+ RGL+   T D      +     L  Y GFDPTA SLH+G+L+ ++      + GH+ + L+GGAT  VGDP   S ER   D   +   + G+      F    G +   ++NN DW +  S ++FL+ VG+   +  M+ +E+V KRL +  G+SFTEFSY LLQ  D+
Sbjct:    3 DVWDELQWRGLVAHST-DEAALQEALQTGPLTYYVGFDPTAASLHVGHLVQVLTAKRLQQAGHRPLILVGGATGLVGDPR-PSAERTMNDPSVVAGWVTGLQGQIAPFLDFDGPAAATMVNNLDWTQSMSTIEFLRDVGKHFSVNRMLDREAVSKRL-ATTGISFTEFSYVLLQSNDY 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCPN (Tyrosyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=tyrS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.314e-20
Identity = 58/176 (32.95%), Postives = 96/176 (54.55%), Query Frame = 3
Query:  237 NVVDILERRGL-LESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +++ +L+ RGL +++     L+ L   N+ +   Y GFDPTA SLH+GN + + V   F   GH    L+G  TA +GDP+G+   R  +  +T+ +N   I K      G SNVV   N  W K  ++++ ++++G    +  M+A ++   R   E+GL+  E +Y +LQ YDF
Sbjct:    4 DLLALLKERGLFVQANFEKELKQLL--NQGSFAFYVGFDPTAPSLHIGNYVLLHVAQIFQAMGHIPHVLLGSGTALIGDPTGRMELRQMMSRETIAENTRNIKKQIRRFLG-SNVVFCQNETWLKKLNYIEVIRELGPCFSVNKMLATDAFSARW--ERGLTLMELNYMVLQAYDF 174          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DEHE1 (Tyrosyl-tRNA synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 53/174 (30.46%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            N +D + +RG+ E I  ++ + L  S +K L++  GFDP++  +HLG+++ +  L      GHQ V ++G  TA++GDPSG S+ RP L  + ++ N     + F  I       +    +W+ +F   D ++   +F  +  M+A++   KR  + + +S TE  Y +LQ YD
Sbjct:    6 NRIDQILKRGVAEVIVEEDFKKLLLSGKK-LRLKEGFDPSSPDIHLGHMVALRKLRQLQDLGHQVVLIVGDWTAQIGDPSGASVTRPMLSAEQVKANAKTYLEQFFKIVDKDKTEVRWQSEWYANFKLEDVVRLSSKFT-VAQMLARDDFAKRYAAGKPISVTELLYPMLQAYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DEHSC (Tyrosyl-tRNA synthetase OS=Dehalococcoides sp. (strain CBDB1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 53/174 (30.46%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            N +D + +RG+ E I  ++ + L  S  K L++  GFDP++  +HLG+++ +  L      GHQ V ++G  TA++GDPSG S+ RP L  + ++ N     + F  I       +    +W+ +F   D ++   +F  +  M+A++   KR  + + +S TE  Y +LQ YD
Sbjct:    6 NQIDQILKRGVAEVIVEEDFKKLLLSGRK-LRLKEGFDPSSPDIHLGHMVALRKLRQLQDLGHQVVLIVGDWTAQIGDPSGASVTRPMLSAEQVKANAKTYLEQFFKIVDKDKTEVRWQSEWYGNFKLEDVVRLSSKFT-VAQMLARDDFAKRYAAGKPISVTELLYPMLQAYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HAHCH (Tyrosyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 58/169 (34.32%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E I  + L       E  L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDP+GKS  RP L  + + +N     +    I       +  N +W    S  D ++  G++  +  M+ ++   KR   EQ +S  EF Y L+QGYD
Sbjct:   10 LIKRGAEEIIQEEGLIEKLKRGEP-LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPTGKSATRPPLTKEDVAQNAQTYKEQVFKILDPKKTEVRFNSEWMDKLSAADMIRLAGQYT-VARMLERDDFHKRYHGEQSISIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSYA2 (Tyrosyl-tRNA synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=tyrS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E ++ ++L      N + L++  GFDPTA  LHLG+ + I  L  F   GH+   LIG  TA++GDPSGK+  RP L  + ++ N    ++    I       ++ N +W+ D S  D + Q+     +  M+ ++   KR  S+  ++  EF Y L+QGYD
Sbjct:   14 LIQRGAQEILSEEDLVKKLKLN-RPLRIKAGFDPTAPDLHLGHTVLINKLKHFQDLGHEIYFLIGDYTAKIGDPSGKNSTRPPLTDEQIKANAETYAEQVFKILDKEKTRVVFNSEWFNDMSAADMI-QLASHQTVSRMLERDDFSKRYASQTPIAIHEFLYPLVQGYD 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEPIN (Tyrosyl-tRNA synthetase OS=Leptospira interrogans GN=tyrS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG ++ I+ + L+S     +KTLK+  GFDPTA  LHLG+ + +  L  F   GH+   L+G  TA +GDP+GKS  R  L  + + +N          +       I+ N +W    +F D L    ++  +  M+ ++   KR ++ Q +S  EF Y L+QGYD
Sbjct:   11 RRGTVDLISEEELKSKLQK-KKTLKIKAGFDPTAPDLHLGHFVQLKKLKHFQDLGHEVSFLLGDFTAMIGDPTGKSETRKRLSREEVLENSKTYQNQVFKVLDPVKTKIVYNSNWCSKMNFEDVLVLSSKY-NVARMLERDDFSKRYKAGQPISMIEFLYPLVQGYD 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEPIC (Tyrosyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tyrS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG ++ I+ + L+S     +KTLK+  GFDPTA  LHLG+ + +  L  F   GH+   L+G  TA +GDP+GKS  R  L  + + +N          +       I+ N +W    +F D L    ++  +  M+ ++   KR ++ Q +S  EF Y L+QGYD
Sbjct:   11 RRGTVDLISEEELKSKLQK-KKTLKIKAGFDPTAPDLHLGHFVQLKKLKHFQDLGHEVSFLLGDFTAMIGDPTGKSETRKRLSREEVLENSKTYQNQVFKVLDPVKTKIVYNSNWCSKMNFEDVLVLSSKY-NVARMLERDDFSKRYKAGQPISMIEFLYPLVQGYD 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESDG (Tyrosyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=tyrS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E I  + L+   +   + L+V  GFDPTA  LHLG+ + I  L  F   GH  + LIG  T  +GDPSG+S  RP L  + + +N     K    I       +  N +W   F   DF++   R+  +  M+ ++  +KR  S   +S  EF Y L+QGYD
Sbjct:   10 RGSAEFIDEEELKKKLAKG-RPLRVKAGFDPTAPDLHLGHTVLIHKLRHFQELGHTVIFLIGDFTGMIGDPSGRSETRPPLTREQVLQNAETYKKQVFKILDPEKTEVRFNSEWMDKFGAADFIRLASRYT-VARMLERDDFEKRYRSNMTISIHEFLYPLVQGYD 173          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_MYCLE1.110e-2234.62Tyrosyl-tRNA synthetase OS=Mycobacterium leprae GN... [more]
SYY_KINRD1.893e-2237.08Tyrosyl-tRNA synthetase OS=Kineococcus radiotolera... [more]
SYY_MYCPN2.314e-2032.95Tyrosyl-tRNA synthetase OS=Mycoplasma pneumoniae G... [more]
SYY_DEHE13.022e-2030.46Tyrosyl-tRNA synthetase OS=Dehalococcoides ethenog... [more]
SYY_DEHSC3.946e-2030.46Tyrosyl-tRNA synthetase OS=Dehalococcoides sp. (st... [more]
SYY_HAHCH5.154e-2034.32Tyrosyl-tRNA synthetase OS=Hahella chejuensis (str... [more]
SYY_PSYA28.792e-2033.14Tyrosyl-tRNA synthetase OS=Psychrobacter arcticus ... [more]
SYY_LEPIN8.792e-2033.53Tyrosyl-tRNA synthetase OS=Leptospira interrogans ... [more]
SYY_LEPIC8.792e-2033.53Tyrosyl-tRNA synthetase OS=Leptospira interrogans ... [more]
SYY_DESDG8.792e-2034.34Tyrosyl-tRNA synthetase OS=Desulfovibrio desulfuri... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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