CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESPS (Tyrosyl-tRNA synthetase OS=Desulfotalea psychrophila GN=tyrS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  243 VDILERRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            ++++ER G ++ I+ D L      + +T   LKV  GFDPTA  LHLG+ + +  L  F   GHQ + LIG  T  +GDP+GKS  R  L ++ + +N     K    I       +  N  W    +  + + Q+     +  M+ +E  K R ES + +S  EF Y L+QGYD
Sbjct:   10 IELIER-GCVDCISRDELVKKLKKSAETGIPLKVKAGFDPTAPDLHLGHTVLLQKLKQFQDLGHQVIFLIGDFTGMIGDPTGKSETRKALTVEQVAENAETYKKQVFKILDPEKTTVAFNSTWLSKLTAHEMI-QLASELTVARMLEREDFKNRYESGKPISIHEFMYPLIQGYD 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYMTH (Tyrosyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=tyrS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG+++ ++ + LR     + KT   L+V  G DPT + L LG+ + +  L  F+ CGHQ V +IG  TA VGDP+G++  RP+L       N     +  + +   S + I  N +W    SF D ++   + + +  M+ +E  KKR E  + +   EF Y L+QG D
Sbjct:   17 RGVVDLVSEEELRQKLERSVKTGRPLRVKLGIDPTGKDLTLGHTVPLRKLRDFVECGHQGVLIIGDYTAMVGDPTGRNEARPQLTHAETTANAQRYLEQAARVLDVSKLEIRRNSEWLAPMSFSDVIRLAAK-STVARMLEREDFKKRYEEGRPIFIHEFFYPLMQGTD 184          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_COXBU (Tyrosyl-tRNA synthetase OS=Coxiella burnetii GN=tyrS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG +E I  D L S  +  EK L++  GFDPTA  +HLG+ + +  L  F   GH+ + LIG  TA +GDP+GK+I R  L  + + +N    +KT+ T    I       + +N  W       D ++    +  +  M+ ++   KR  S+Q ++  EF Y LLQGYD
Sbjct:   12 KRGAVEIIHEDELLSRLAE-EKPLRIKLGFDPTAPDIHLGHTVVLNKLRQFQTLGHEVIFLIGDFTAMIGDPTGKNITRQPLTREIVMEN----TKTYETQAFRILDPDKTQVTSNSTWINKLKADDLVRLAATYT-VARMLERDDFNKRYLSQQPIAIHEFLYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CARHZ (Tyrosyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tyrS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  258 RRGLLESITSDNL--RSLASSNE-KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E +  + L  +   S NE K L+V  G DPTA  +HLG+ + +  L  F   GH+ + +IG  TA++GDP+GK   R +L  + + +N     +    I   +   ++ N +W    +F D +K   ++  +  M+ +E   KR +  Q +S  EF Y L+QGYD
Sbjct:   14 KRGVAEIVPEEELVEKLKKSLNEGKPLRVKLGLDPTAPDIHLGHTVVLQKLKQFQSLGHEVIIIIGDFTAQIGDPTGKKETRKQLSWEEVLENAKTYQEQIFKILDPAKTKMVFNSEWLAKLTFADVIKLASKYT-VARMLEREDFAKRFKEGQPISIHEFFYPLMQGYD 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACHD (Tyrosyl-tRNA synthetase OS=Bacillus halodurans GN=tyrS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG++E +  + LR     + +T   LKV  G DP+A  +H+G+ + +  L  F   GH+   LIG  T R+GDPSGKS  R +L  + ++ N     + +  I       +  N  W    +F D +K   +   +  M+ ++  +KR +S Q +S  EF Y L+QGYD
Sbjct:   22 KRGVVEIVPEEALREKIEKSVRTGKPLKVKLGMDPSAPDVHIGHTVVLHKLRQFQDLGHEVQMLIGDFTGRIGDPSGKSETRKQLTDEQVKANARTYVEQYGKILDMEKATLHYNSKWLSALNFEDVIKLASQMT-VARMLERDDFEKRYKSGQPISIHEFFYPLMQGYD 190          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ACIAD (Tyrosyl-tRNA synthetase OS=Acinetobacter sp. (strain ADP1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E I+ ++L      N + L++  GFDPTA  LHLG+ + I  L  F   GH+   LIG  TA +GDP+GKS  RP L  + +E N     +    I   +   +  N +W+   +  D + Q+     +  M+ ++   KR  + Q ++  EF Y L+QGYD
Sbjct:   13 LIQRGTHEIISEEDLLKKLKEN-RPLRIKAGFDPTAPDLHLGHTVLINKLKAFQDLGHEVTFLIGDYTAMIGDPTGKSATRPPLTREQVEANAKTYQEQVFKILDPNKTKVRFNSEWFNQRTAADLI-QLASQQTVSRMLERDDFTKRYNNHQPIAIHEFLYPLVQGYD 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THICR (Tyrosyl-tRNA synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  321 KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            K LK+  GFDPTA  LHLG+ + I  L  F   GH+ + LIG  TA +GDP+GKS  RP L  + + KN     +    I   +   ++ N +W    S  D +K  G    +  M+ +    +R +S   ++  EF Y L+QGYD
Sbjct:   33 KPLKIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHEILFLIGDFTAMIGDPTGKSATRPPLSEEDVLKNAETYKEQVFKILDPAKTKVVFNSEWMSKLSAADMIKLAGT-TTVARMLERNDFGERYQSNTPIAIHEFLYPLVQGYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_PSEAE (Tyrosyl-tRNA synthetase 2 OS=Pseudomonas aeruginosa GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS+ RP L  + + +N          I   +   +  N  W    +  DF++   ++  +  M+ ++   KR  S Q ++  EF Y L+QGYD
Sbjct:   34 LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPSGKSVTRPPLTREQVLENAETYKSQVFKILDPAKTEVAFNSTWMDQLTPADFIRLASQYT-VARMLERDDFSKRYASNQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HELHP (Tyrosyl-tRNA synthetase OS=Helicobacter hepaticus GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.694e-18
Identity = 57/169 (33.73%), Postives = 81/169 (47.93%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYC---GFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG +E I  + +R L      T + +C   GFDPTA  LHLG+ + +  L+ F R G     LIG  TA +GDPSGKS  R  L  + ++ N L   +    +       I  N  W  +   L  +     F+ +  M+ ++   KR  + Q +S  EF Y LLQGYD
Sbjct:   12 RGCVEFIGEEYIRDLVERFYNTGERFCVKAGFDPTAPDLHLGHTVLLQKLATFQRYGGDVKFLIGDFTATIGDPSGKSETRKPLSAEQVKANALTYKEQVFKVLDPQYTQICFNSKWLNELGALGLITLTSHFS-VARMLERDDFTKRYNNNQSISIVEFIYPLLQGYD 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLTE (Tyrosyl-tRNA synthetase OS=Chlorobium tepidum GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.694e-18
Identity = 57/166 (34.34%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  270 LESITSDNL-RSLASS--NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +E I++D L R L  S  N   LK+  G DP+   LHLG+ + +  L  F   GH+A+ +IG  TA +GDPSGKS  RP+L  +   +N     +  S I       I  N DW     F D ++    +  +  M+ ++  +KR  S+  +S  EF Y L QG D
Sbjct:   18 VEVISTDELERKLTKSLKNGTPLKIKLGADPSRPDLHLGHSVVLRKLREFQDLGHEAILIIGDFTAMIGDPSGKSKTRPQLTAEEARENGKSYFEQASKILDPEKTTICYNADWLSQMHFADVIRLSSHYT-VARMLERDDFEKRYRSQTPISIHEFLYPLAQGMD 182          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_DESPS4.363e-1933.14Tyrosyl-tRNA synthetase OS=Desulfotalea psychrophi... [more]
SYY_SYMTH7.443e-1932.54Tyrosyl-tRNA synthetase OS=Symbiobacterium thermop... [more]
SYY_COXBU7.443e-1933.92Tyrosyl-tRNA synthetase OS=Coxiella burnetii GN=ty... [more]
SYY_CARHZ7.443e-1931.76Tyrosyl-tRNA synthetase OS=Carboxydothermus hydrog... [more]
SYY_BACHD9.720e-1931.76Tyrosyl-tRNA synthetase OS=Bacillus halodurans GN=... [more]
SYY_ACIAD9.720e-1933.14Tyrosyl-tRNA synthetase OS=Acinetobacter sp. (stra... [more]
SYY_THICR2.828e-1835.62Tyrosyl-tRNA synthetase OS=Thiomicrospira crunogen... [more]
SYY2_PSEAE2.828e-1834.72Tyrosyl-tRNA synthetase 2 OS=Pseudomonas aeruginos... [more]
SYY_HELHP3.694e-1833.73Tyrosyl-tRNA synthetase OS=Helicobacter hepaticus ... [more]
SYY_CHLTE3.694e-1834.34Tyrosyl-tRNA synthetase OS=Chlorobium tepidum GN=t... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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