CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MYCGE (Tyrosyl-tRNA synthetase OS=Mycoplasma genitalium GN=tyrS PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 50/148 (33.78%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  318 EKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            EK    Y GFDPTA SLH+GN + I +       GH    ++G ATA +GDP+G+   R  L+   + KN   I K      G  +V+I  N  W +  ++++ ++++G F  +  M++ ++   R   E+GL+  E +Y +LQ YDF
Sbjct:   30 EKKNNFYVGFDPTANSLHIGNYVLIHIAKLLKDMGHTPHIVLGSATALIGDPTGRIELRKILEEKEIVKNTKTIKKQIKQFLG--DVIIHENKVWLEKLNYIEVIRELGAFFSVNKMLSTDAFSARW--EKGLTLMELNYMILQAYDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANC5 (Tyrosyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  D L++  ++  K L+V  GFDPTA  LHLG+ + +  +  F + GHQ + LIG  T  +GDPSGK+  R  L  + +  N     +    I       +  N +W+   S  D +K   +   +  M+ ++   KR  S+Q ++  EF Y L+QGYD
Sbjct:   13 RGAEEILKLDQLQARLATG-KPLRVKAGFDPTAPDLHLGHTVLLNKMRQFQQLGHQVIFLIGDFTGMIGDPSGKNATRKPLSREDVLANARTYEEQVFKILDRERTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFGSQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANAC (Tyrosyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  D L++  ++  K L+V  GFDPTA  LHLG+ + +  +  F + GHQ + LIG  T  +GDPSGK+  R  L  + +  N     +    I       +  N +W+   S  D +K   +   +  M+ ++   KR  S+Q ++  EF Y L+QGYD
Sbjct:   13 RGTEEILKLDQLQARLATG-KPLRVKAGFDPTAPDLHLGHTVLLNKMRQFQQLGHQVIFLIGDFTGMIGDPSGKNATRKPLSREDVLANARTYEEQVFKILDRERTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFGSQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PELCD (Tyrosyl-tRNA synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 55/170 (32.35%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG +E +    L +    + +T   LKV  GFDPTA  LH+G+ + I  L  F   GH+   LIG  T  +GDP+GK+  R  L  + + KN     +    I       ++ N  W    S  D +   GR+  +  M+ ++   KR   +Q ++  EF Y L+QGYD
Sbjct:   12 RRGAVEILVESELEAKLKKSVETGVPLKVKAGFDPTAPDLHVGHTVLIQKLKQFQDLGHEVNFLIGDFTGMIGDPTGKNETRKALTREEVLKNAETYKQQVFKILDPERTKVVFNSSWMGQMSAADLIGLAGRYT-VARMLERDDFHKRFSGQQPIAIHEFLYPLVQGYD 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NITOC (Tyrosyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG  E +  + L+ L     + L+V  GFDPTA  LHLG+ + +  L  F   GH+ + LIG  T  +GDPSGK++ R  L  D + +N     +    +      +++ N  W    +  D ++    +  +  M+ ++   KR + ++ ++  EF Y LLQGYD
Sbjct:   12 RRGTEEVLLEEELK-LRLEQGRILRVKAGFDPTAPELHLGHTVLLNKLRQFQEFGHEVLFLIGDFTGMIGDPSGKNVTRQPLTRDKILENARTYEEQIFRVLDPEKTLVVFNSSWMSGMTAADLVRLSSHYT-VARMLERDDFYKRYQGKRPIAIHEFLYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DESVH (Tyrosyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E I    LR         L++  GFDPTA  LHLG+ + I  L  F   GH  + LIG  T  +GDPSG+S  RP L  + +  N     +    I      V+  N  W  +F   DF++   R+  +  M+ ++  +KR +  + ++  EF Y L+QGYD
Sbjct:   12 KRGCAELIDEGELRKKLERGTP-LRIKAGFDPTAPDLHLGHTVLIHKLRHFQELGHTVIFLIGDFTGLIGDPSGRSDTRPPLTREQVLANAETYKQQVFKILDPEKTVVDFNSRWMGEFGAADFIRLASRYT-VARMMERDDFEKRYKEGRPIAVHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEU2 (Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L      + +L  ++T+ +    I   +   +  N  W    S  DF++   ++  +  M+ ++   KR +S Q ++  EF Y L+QGYD
Sbjct:   34 LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQIIFLIGDFTGMIGDPSGKSATRPPL----TREQVLDYAETYKSQVFKILDPAKTEVAFNSTWMDQLSPADFIRLSSQYT-VARMLERDDFDKRYKSNQSIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSESM (Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv. tomato GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L      + +L  ++T+ +    I   +   +  N  W    S  DF++   ++  +  M+ ++   KR +S Q ++  EF Y L+QGYD
Sbjct:   34 LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPSGKSATRPPL----TREQVLDYAETYKSQVFKILDPAKTEVAFNSTWMDKLSPADFIRLSSQYT-VARMLERDDFDKRYKSNQSIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEF5 (Tyrosyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 55/169 (32.54%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E +    L       E  L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L  + + +N          I   +   +  N  W       DF++   ++  +  M+ ++   KR  + Q ++  EF Y L+QGYD
Sbjct:   10 LIKRGAEELLVESELIEKLKRGEP-LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPSGKSATRPPLTREQVLENAETYKSQVFKILDPAKTEVAFNSTWMDKMGPADFIRLTSQYT-VARMLERDDFDKRYSTNQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACSK (Tyrosyl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG++E +  +  R     + +T   L +  G DP+A  +H+G+ + +  L  F   GH    LIG  T ++GDP+GKS  R  L  + +++N     + +  I       IL N  W  +  F D LK  G+   +  M+ +E   KR ++ Q +S  EF Y L+QGYD
Sbjct:   24 RGVVEVVPKEAFREKIEKSVRTGKPLNIKLGMDPSAPDVHIGHTVVLQKLRQFQEYGHHIQLLIGDFTGKIGDPTGKSETRKVLTDEQVKQNAQTYVEQYGKILDIEKTEILYNSRWLSELKFDDVLKLAGQMT-VARMLEREDFSKRYKTGQPISVHEFFYPLMQGYD 191          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_MYCGE4.824e-1833.78Tyrosyl-tRNA synthetase OS=Mycoplasma genitalium G... [more]
SYY_XANC56.300e-1832.53Tyrosyl-tRNA synthetase OS=Xanthomonas campestris ... [more]
SYY_XANAC6.300e-1832.53Tyrosyl-tRNA synthetase OS=Xanthomonas axonopodis ... [more]
SYY_PELCD6.300e-1832.35Tyrosyl-tRNA synthetase OS=Pelobacter carbinolicus... [more]
SYY_NITOC6.300e-1830.54Tyrosyl-tRNA synthetase OS=Nitrosococcus oceani (s... [more]
SYY_DESVH8.229e-1832.93Tyrosyl-tRNA synthetase OS=Desulfovibrio vulgaris ... [more]
SYY_PSEU21.075e-1735.14Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv... [more]
SYY_PSESM1.075e-1735.14Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv... [more]
SYY_PSEF51.075e-1732.54Tyrosyl-tRNA synthetase OS=Pseudomonas fluorescens... [more]
SYY_BACSK1.075e-1731.36Tyrosyl-tRNA synthetase OS=Bacillus clausii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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