CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_KLEP7 (Tyrosyl-tRNA synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     DT+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEDTVQEWVDKIRKQVAPFLDFDCGDNSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 187
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_KLEP3 (Tyrosyl-tRNA synthetase OS=Klebsiella pneumoniae (strain 342) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     DT+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEDTVQEWVDKIRKQVAPFLDFDCGDNSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHISS (Tyrosyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=tyrS PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHIB3 (Tyrosyl-tRNA synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALEP (Tyrosyl-tRNA synthetase OS=Salmonella enteritidis PT4 (strain P125109) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T ++  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEDALAERLA-QGPVALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ESCF3 (Tyrosyl-tRNA synthetase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOUT (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 187
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOSM (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOSE (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain SE11) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOLU (Tyrosyl-tRNA synthetase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_KLEP72.155e-3442.22Tyrosyl-tRNA synthetase OS=Klebsiella pneumoniae s... [more]
SYY_KLEP32.155e-3442.22Tyrosyl-tRNA synthetase OS=Klebsiella pneumoniae (... [more]
SYY_SHISS2.815e-3442.22Tyrosyl-tRNA synthetase OS=Shigella sonnei (strain... [more]
SYY_SHIB32.815e-3442.22Tyrosyl-tRNA synthetase OS=Shigella boydii serotyp... [more]
SYY_SALEP2.815e-3441.67Tyrosyl-tRNA synthetase OS=Salmonella enteritidis ... [more]
SYY_ESCF32.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia fergusonii ... [more]
SYY_ECOUT2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOSM2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOSE2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOLU2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O17:K5... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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