CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_PSEHT (Tyrosyl-tRNA synthetase 2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E +  D L     S +K LK+  GFDPTA  LHLG+ + I  +  F   GH+ V LIG  T  +GDP+GK++ R  L  + +  N     +    I   +   +  N  W ++      +K   R   +  M+ ++  KKR  S Q ++  EF Y L+QG+D
Sbjct:   11 KRGTEEILIEDELVEKLKSGKK-LKIKAGFDPTAPDLHLGHTVLINKMKTFQDLGHEVVFLIGDFTGMIGDPTGKNVTRKPLTREDVLANAETYKEQVFKILDPAKTTVAFNSTWMENLGAAGMIKLAAR-QTVARMLERDDFKKRYASGQSIAIHEFLYPLVQGWD 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSE14 (Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L      + +L  ++T+ +    I   +   +  N  W    S  DF++   ++  +  M+ ++   KR +S Q ++  EF Y L+QGYD
Sbjct:   34 LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQIIFLIGDFTGMIGDPSGKSATRPPL----TREQVLDYAETYKSQVFKILDPAKTEVAFNSTWMDKLSPADFIRLSSQYT-VARMLERDDFDKRYKSNQSIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_PHOLL (Tyrosyl-tRNA synthetase 2 OS=Photorhabdus luminescens subsp. laumondii GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  300 SLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +LA    + L +  GFDPTA  LHLG+ + +  L  F   GH+ V +IG  TA +GDP+G++  RP L  + + KN        + +    N+ I  N +W+ +  F + +K + +   +  ++ ++  K R ES+  +   E  Y +LQGYD
Sbjct:   26 ALARQENRKLTIKLGFDPTAPDLHLGHAVVLQKLKDFQDEGHRIVVIIGDFTAGIGDPTGRNKLRPPLTPEQINKNSQTYINQLAKVINIENIEIRKNSEWFNNMPFSNVIKLISKIT-LAQIMHRDDFKTRFESKAPVHLHEIIYPILQGYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEPK (Tyrosyl-tRNA synthetase OS=Pseudomonas putida (strain KT2440) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E +    L       +  L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L  + + +N     +    I   +   +  N  W    +  DF++   ++  +  M+ ++   KR  + Q ++  EF Y L+QGYD
Sbjct:   10 LIKRGAEEVLVESELVEKLKRGQP-LRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPSGKSATRPPLTREQVLENAETYKQQVFKILDPAKTEVAFNSTWMDKLTPADFIRLASQYT-VARMLERDDFDKRYTTNQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PSEPF (Tyrosyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E +    L       +  L++  GFDPTA  LHLG+ + I  L  F   GHQ + LIG  T  +GDPSGKS  RP L  + + +N          I   +   +  N  W       DF++   ++  +  M+ ++   KR  + Q ++  EF Y L+QGYD
Sbjct:   10 LIKRGAEELLVESELIEKLKRGQP-LRIKAGFDPTAPDLHLGHTVLINKLRQFQELGHQVIFLIGDFTGMIGDPSGKSATRPPLTREQVLENAETYKTQVFKILDPAKTEVAFNSTWMDQMGPADFIRLTSQYT-VARMLERDDFDKRYTTNQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEGPL (Tyrosyl-tRNA synthetase OS=Legionella pneumophila (strain Lens) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            LK+  GFDPTA  LHLG+ + +  L  F + GH+ + LIG  TA +GDP+GK++ R  L  +T+ +N          I       +  N  W   F+ +D ++       +  M+ ++   KR  + Q ++  EF Y LLQGYD
Sbjct:   34 LKIKAGFDPTAPDLHLGHTVLLNKLRQFQQFGHEVIFLIGDFTAMIGDPTGKNVTRMPLSQETVLENAKTYQHQVFKILDPDKTTVAFNSQWLNKFNAVDLIRLAATHT-VARMLERDDFNKRYTTGQPIAIHEFLYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEGPH (Tyrosyl-tRNA synthetase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tyrS PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            LK+  GFDPTA  LHLG+ + +  L  F + GH+ + LIG  TA +GDP+GK++ R  L  +T+ +N          I       +  N  W   F+ +D ++       +  M+ ++   KR  + Q ++  EF Y LLQGYD
Sbjct:   34 LKIKAGFDPTAPDLHLGHTVLLNKLRQFQQFGHEVIFLIGDFTAMIGDPTGKNVTRMPLSQETVLENAKTYQHQVFKILDPDKTTVAFNSQWLNKFNAVDLIRLAATHT-VARMLERDDFNKRYTTGQPIAIHEFLYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LEGPA (Tyrosyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            LK+  GFDPTA  LHLG+ + +  L  F + GH+ + LIG  TA +GDP+GK++ R  L  +T+ +N          I       +  N  W   F+ +D ++       +  M+ ++   KR  + Q ++  EF Y LLQGYD
Sbjct:   34 LKIKAGFDPTAPDLHLGHTVLLNKLRQFQQFGHEVIFLIGDFTAMIGDPTGKNVTRMPLSQETVLENAKTYQHQVFKILDPDKTTVAFNSQWLNKFNAVDLIRLAATHT-VARMLERDDFNKRYTTGQPIAIHEFLYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLCH (Tyrosyl-tRNA synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            R  +E I+ D L     S++K+   L +  G DP+   LHLG+ + +  L  F   GH A+ +IG  TA +GDPSGKS  RP+L  +   +N     +    I  ++N  + +N DW    +F D ++    +  +  M+ +   ++R  +++ +S  EF Y L QG D
Sbjct:   15 RNTVEIISVDELEQKLVSSQKSGKPLNIKLGADPSRPDLHLGHSVVLRKLRDFQDLGHHAILIIGNFTAMIGDPSGKSKTRPQLSAEEAAENGRSYFEQAIKILDAANTTLCSNADWLGAMTFADVIRLSSHYT-VARMLERNDFEQRYRAQEPISIHEFLYPLAQGMD 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AZOSE (Tyrosyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG  E +    L     S ++ L+V  GFDPTA  LHLG+ + +  L  F   GHQ + L+G  TA +GDPSGK+  RP L  + + +N     +    I       I  N  W +       ++   R+  +  M+ ++   KR    Q ++  EF Y L QGYD
Sbjct:   10 LIKRGAEELLVEAELVEKLES-DRPLRVKAGFDPTAPDLHLGHTVLLNKLRHFQELGHQVMFLVGDFTAMIGDPSGKNATRPPLSREQILENARTYQEQVFKILDPDKTEICFNSSWMESLGTAGMIRLASRYT-VARMLERDDFAKRYAGGQAIAIHEFLYPLCQGYD 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY2_PSEHT1.075e-1732.34Tyrosyl-tRNA synthetase 2 OS=Pseudoalteromonas hal... [more]
SYY_PSE141.404e-1735.14Tyrosyl-tRNA synthetase OS=Pseudomonas syringae pv... [more]
SYY2_PHOLL1.404e-1731.37Tyrosyl-tRNA synthetase 2 OS=Photorhabdus luminesc... [more]
SYY_PSEPK1.833e-1731.95Tyrosyl-tRNA synthetase OS=Pseudomonas putida (str... [more]
SYY_PSEPF1.833e-1731.95Tyrosyl-tRNA synthetase OS=Pseudomonas fluorescens... [more]
SYY_LEGPL1.833e-1733.33Tyrosyl-tRNA synthetase OS=Legionella pneumophila ... [more]
SYY_LEGPH1.833e-1733.33Tyrosyl-tRNA synthetase OS=Legionella pneumophila ... [more]
SYY_LEGPA1.833e-1733.33Tyrosyl-tRNA synthetase OS=Legionella pneumophila ... [more]
SYY_CHLCH1.833e-1730.77Tyrosyl-tRNA synthetase OS=Chlorobium chlorochroma... [more]
SYY_AZOSE1.833e-1731.95Tyrosyl-tRNA synthetase OS=Azoarcus sp. (strain Eb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
back to top