CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANOR (Tyrosyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=tyrS PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  D L +  +S    L+V  GFDPTA  LHLG+ + +  +  F + GHQ + LIG  T  +GDPSGK+  R  L  + +  N     +    I       +  N +W+   S  D +K   +   +  M+ ++   KR  S+Q ++  EF Y L+QGYD
Sbjct:   13 RGAEEILKLDQLEARLTSGVP-LRVKAGFDPTAPDLHLGHTVLLNKMRQFQQLGHQVIFLIGDFTGMIGDPSGKNATRKPLSREDVLANARTYEEQVFKILDRERTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFGSQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANOM (Tyrosyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  D L +  +S    L+V  GFDPTA  LHLG+ + +  +  F + GHQ + LIG  T  +GDPSGK+  R  L  + +  N     +    I       +  N +W+   S  D +K   +   +  M+ ++   KR  S+Q ++  EF Y L+QGYD
Sbjct:   13 RGAEEILKLDQLEARLTSGVP-LRVKAGFDPTAPDLHLGHTVLLNKMRQFQQLGHQVIFLIGDFTGMIGDPSGKNATRKPLSREDVLANARTYEEQVFKILDRERTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFGSQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PASMU (Tyrosyl-tRNA synthetase OS=Pasteurella multocida GN=tyrS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 53/167 (31.74%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E ++  +L      N + L+V  G DPTA  +HLG+ + +  L  F + GH+ + LIG  T  VGDPSGK+  RP L  D + +N     +    I       I+ N  W  +      ++    +  +  M+ ++  KKR  + Q ++  EF Y LLQGYD
Sbjct:   12 KRGVDEILSEADLIEKLKEN-RPLRVKLGADPTAPDIHLGHTVVLNKLRQFQQFGHEVIFLIGDFTGMVGDPSGKNTTRPPLSRDDVLRNAETYKQQIYKILDPQKTRIVFNSSWLGELGTEGMIRLTSNYT-VARMLERDDFKKRFSNNQPIAIHEFIYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROMT (Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  303 LASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNI------LGISK----TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L+S ++K L+V  G DPT   +H+G+ +    L  F   GH A+ +IG  TAR+GDP+GKS  R +L  D ++ N       LG+ K    +       S + I  N +W ++ +    ++ +   + +G M+AKE    R +S   +S  EF Y LLQGYD
Sbjct:   38 LSSVDKKPLRVKLGIDPTGTDIHIGHSILFRKLRAFQDAGHTAILIIGDFTARIGDPTGKSKTRIQLSKDEVQSNALNYLEQLGLGKDPKDSLLDFSIPSRIEIRRNSEWLENLNLSKVIELLSN-STVGQMLAKEDFSNRYKSGTPISLHEFLYPLLQGYD 198          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NITMU (Tyrosyl-tRNA synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.084e-17
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E +  D L    + N + L++  GFDPTA  LHLG+ + +  +      GH A+ LIG  T  +GDPSGK+  RP L  + + +N          I       ++ N  W    +  D +K       +  M+ ++   KR +S + ++  EF Y L+QGYD
Sbjct:   13 KRGCSELLLEDELEQKLAQN-RPLRIKAGFDPTAPDLHLGHTVLLNKMRHLQDLGHHALFLIGDFTGMIGDPSGKNTTRPPLSREQVAENAKSYQDQVFRILKPEQTEVVFNSAWMDRLNAADLIKLAATHT-VARMLERDDFGKRYQSNKPIAIHEFLYPLIQGYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_IDILO (Tyrosyl-tRNA synthetase OS=Idiomarina loihiensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.084e-17
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +    L    +S  K L V  GFDPTA  LHLG+ + I  L  F   GH+ V LIG  T  +GDP+GK++ R  L  + +  N     +    I   +   I  N +W       D +K   R   +  M+ ++  KKR ++ Q ++  EF Y L+QG+D
Sbjct:   14 RGAEEVLLEQELAEKLASG-KPLTVKAGFDPTAPDLHLGHTVLINKLRVFQDFGHKVVFLIGDFTGMIGDPTGKNVTRKPLTTEQVIANAETYKEQVFKILDPAKTEIRFNSEWMSKMGAADMIKLAAR-QTVARMLERDDFKKRYQNNQSIAIHEFLYPLVQGWD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XYLFT (Tyrosyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            N + ++ER G  E +  D L     S  + L++  GFDPT+  LHLG+ + +  +  F   GHQ V LIG  T  +GDP+GK++ R  L  + +  N          +   +   +  N +W++  S +D +K   +   +  M+ ++   KR  S+Q +   EF Y L+QGYD
Sbjct:    6 NSIALIER-GANEILKFDELERRLRSG-RPLRIKAGFDPTSPDLHLGHTVLLNKMRQFQDLGHQVVFLIGDFTGMIGDPTGKNVTRKPLSREDVLANASTYEDQVFKVLDRTLTEVRFNSEWFEKMSAVDMIKLAAQHT-VARMLERDDFAKRFASQQPIVIHEFLYPLIQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANCP (Tyrosyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  + L +  +S    L+V  GFDPTA  LHLG+ + +  +  F   GHQ + LIG  T  +GDPSGK++ R  L  + +  N     +    I   +   +  N +W+   S  D +K   +   +  M+ ++   KR   +Q ++  EF Y L+QGYD
Sbjct:   13 RGAEEILKLEQLEARLTSGVP-LRVKAGFDPTAPDLHLGHTVLLNKMRQFQELGHQVIFLIGDFTGMIGDPSGKNVTRKPLSREDVLANARTYEEQVFKILDRTRTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFAGQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XANC8 (Tyrosyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  + L +  +S    L+V  GFDPTA  LHLG+ + +  +  F   GHQ + LIG  T  +GDPSGK++ R  L  + +  N     +    I   +   +  N +W+   S  D +K   +   +  M+ ++   KR   +Q ++  EF Y L+QGYD
Sbjct:   13 RGAEEILKLEQLEARLTSGVP-LRVKAGFDPTAPDLHLGHTVLLNKMRQFQELGHQVIFLIGDFTGMIGDPSGKNVTRKPLSREDVLANARTYEEQVFKILDRTRTEVRFNSEWFGQMSAADMIKLSAQHT-VARMLERDDFAKRFAGQQPIAIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PELLD (Tyrosyl-tRNA synthetase OS=Pelodictyon luteolum (strain DSM 273) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  270 LESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +E I+S  L      + KT   LKV  G DP+   LHLG+ + +  L  F   GH+A+ +IG  TA +GDPSGKS  RP+L  +   +N     +  S I       I  N DW  + +F D ++    +  +  M+ ++  ++R  S + +S  EF Y L Q  D
Sbjct:   18 VEIISSAELEQKIQHSIKTGAPLKVKLGADPSRPDLHLGHSVVLRKLREFQDLGHEAILIIGDFTAMIGDPSGKSKTRPQLSAEEARENGASYFEQASKILDPHKTTICYNADWLGNMTFADVIRLSSHYT-VARMLERDDFERRYRSSEPISIHEFLYPLAQAMD 182          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_XANOR2.394e-1732.53Tyrosyl-tRNA synthetase OS=Xanthomonas oryzae pv. ... [more]
SYY_XANOM2.394e-1732.53Tyrosyl-tRNA synthetase OS=Xanthomonas oryzae pv. ... [more]
SYY_PASMU2.394e-1731.74Tyrosyl-tRNA synthetase OS=Pasteurella multocida G... [more]
SYY_PROMT3.127e-1733.95Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus... [more]
SYY_NITMU4.084e-1730.54Tyrosyl-tRNA synthetase OS=Nitrosospira multiformi... [more]
SYY_IDILO4.084e-1733.13Tyrosyl-tRNA synthetase OS=Idiomarina loihiensis G... [more]
SYY_XYLFT5.334e-1730.46Tyrosyl-tRNA synthetase OS=Xylella fastidiosa (str... [more]
SYY_XANCP5.334e-1731.33Tyrosyl-tRNA synthetase OS=Xanthomonas campestris ... [more]
SYY_XANC85.334e-1731.33Tyrosyl-tRNA synthetase OS=Xanthomonas campestris ... [more]
SYY_PELLD5.334e-1732.53Tyrosyl-tRNA synthetase OS=Pelodictyon luteolum (s... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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